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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttttagccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttgtatttctag

Basic information

species Glycine max
transcript GLYMA09G02490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttttagccatg--gattaccctctggttgggtattcaatatttgag----ttttcacactttgatccttgtatttctag
|||||| ||||||||||| || |||||||| || ||||| |||||| |||||||||| ||||||||| || |  |   |      || ||| ||     | | |  ||  ||||     || | ||| || ||    ||  ||| |||
GTGGTGCCATGATATTGGCCGGGAACAAGCTGCCAATAAGCCTCTTCTAAAAACAGTATTTCAGgtatttatctgttttttcagataacctttgccacagcaatacattcttgatgcatttgtaacatttggacaactgggtttgtag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgta----gtttttagccat------ggattaccctctggttgggtattcaatatttgagttttcacactttgatcc-ttgtatttctag-----------------
|||||| ||||||||||| || |||||||| || |||||||| ||| |||| || || |||||||||    | ||  | |  |      ||  |||| | ||      |  |  | || | |||  | |   | ||||   | |||   || |                 
GTGGTGCCATGATATTGGCCGTGAACAAGCTGCCAATAAACCACTTCTAAAGACTGTATTTCAGgtaccgaggttaaatctgtctttcagggataccttatgcacatatgatatacatat-agtcctgatcatctgatgtatagtaacacttggacatctgagtatgtag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 4
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttttagccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttgtatttctag-----
|||||| ||||||||||||||||| || || || || ||||||||| | ||||||||||| |||||| |   || ||||   ||    ||| ||    ||||  |||    |  ||  | |   |||  |  || | |||       
GTGGTGCCATGATATTGGTCGAGAGCATGCTGCGAACAAACCTCTTCTGAAAACAGTTTTCCAGgtactccctatccatatttttgtatctagtacaatattgcataacaaa--ttcaataagatgagtcccgtttctcttctatag

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ31796 (Selaginella moellendorffii), 5'ss of exon 6
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttttagccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttgtatttctag
|||||||||||||||||||||||| || ||||| || |||||| |  | || || || ||||||||  |  |   |  || |  | | | |  |    |     ||   |   ||||  ||                     
GTGGTGTCATGATATTGGTCGAGAGCACGCAGCCAACAAACCTTTGCTGAAGACCGTCTTTCAGgtgatcatc--ctttgaagcatcgtattctcaatt-cctgattcctattttttttcag--------------------

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ38064 (Selaginella moellendorffii), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttttagccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttgtatttctag
|||||||||||||||||||||||| || ||||| || |||||| |  | || || || ||||||||  |  |   |  || |  | | |    |    |     ||   |   ||||  ||                     
GTGGTGTCATGATATTGGTCGAGAGCACGCAGCCAACAAACCTTTGCTGAAGACCGTCTTTCAGgtgatcatc--ctttgaagcatcgtactctcaatt-cctgattcctattttttttcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023193|gb|BM094227.1|BM094227
EST:     TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAG                         GTCATGATGCGT
genomic: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagttttta ... gtatttctagGTCATGATGCGT
EST: gi|209698106|gb|BW661049.1|BW661049
EST:     TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAG                         GTCATGATGCGTCTATTCAGT
genomic: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagttttta ... gtatttctagGTCATGATGCGTCTATTCAGT