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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgatattctgctactttaagagagatgatgtctatggcatcaaactcttcctaatgttatcgtatcactatgaggtgtctgggctaatttttcttttctcttctgtgtgtttttgcag

Basic information

species Glycine max
transcript GLYMA09G02160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g52630.2 (Oryza sativa), 5'ss of exon 4
CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtg-tgatatt-ctgctactttaagagagatgatgtctatggcatcaaactcttcctaatgttat-cgtatcactatgaggtgtctgggctaatttttcttttctcttctgtgtgtttttgcag
 ||||| || ||||| || |||||||| ||||||||||| |||||||||||||||| |||||   | || || || ||||| |  ||||| | ||| |||||  | |  | || |   | || |   ||   | |   |||    | || | |      ||| | |  |  |  ||  |    | |   |                                    
TCTATACAGCGATTACCTGGATGCTGCAGATACACCTGGGTGGTATTGTGGACCTACTTTCTACACTACAGAAGTCCTCCGCAAATTTGCAAGGTCACAGgtaaggttttgttgcccatgctcttgaagtagtcaaagctacattagcacagttcggtgaatttgacacccaaaacccttcaatttgcag------------------------------------

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtg--tgatattctgctact-ttaagagagatgatg-tctatggcatcaaactcttcctaatgttatcgtatcact----atgaggtgtctgggctaatttttcttttctcttctgtgtgtttttgcag---------------------------------------
 ||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||    ||||| |||  |||||| |  |||||||| |   |  | |||   |||| || | ||| ||| |  |||  |  ||   | |       ||   |   |  ||||    |  | |  | |  |   || ||| |   |||   | | | ||||  ||                                        
TCTATACAGTGATTATCTGGATGCTGCTGATACTCCTGGATGGTACTGTGGACCTAATTTCTATTCGACAAGTGTGCTACGTGACTTTGCTAGATCCCAGgtattgcttcttttcctttactctttacagaaatggtaatctcagatatagtaatggataagatccaaaaatgacacttttaaccaagattgtacgaagatctttttaaactccattttttattttgacatctaaattggatttaactcggccttgctgtattttggcag

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgatattctgctactttaagagagatgatgtctatggcatcaaactcttcctaatgttatcgtatcactatgaggtgtctgggctaatttttcttttctcttctgtgtgtttttgcag
 ||||  ||||||||||| || ||||||||||| || |||||||| ||||| ||||| |||| | | || ||  | || || | |||| | |  || ||||| ||    ||||    |  | |||  | |  |     ||        |   |  || |||  |   | |  || |    ||| | |||                                  
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatg----attca--caaatgaaggaaaacaaacaagattttgaaggagcttatctgatggaactttgtgtcttt----tgttttggcag--------------------------------

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 5
CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgatattctgctactttaagagagatgatgtctatggcatcaaactcttcctaatgttatcg-tatcactatgaggtgtctgggctaatttttcttttctcttctgtgtgtttttg-cag
||| || |||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||| || || || |||   ||||||||| ||||||| || ||||| ||| | | | ||   |  |  ||       ||| |  ||  || |   || ||   |||   |  ||     |  ||  | ||    |||||   ||| ||   || || |||
CCTGTACAGTGATTATCTTGAAGCTGCTGACACCCCTGGATGGTATTGTGGACCTAATTTCTATTCAACTGAAGTCCTGCGTGAATTTGCCAAGACCCAGgtatgcgatat-ctgattcctcaattaaagttgtgaggg-aacatgagtctgctcatgtagtaataaatattgttg-gaaccaacaaggtcacttaaatttttcatatctctgaccttctggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502056|gb|AW203429.1|AW203429
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|37994320|gb|CF806066.1|CF806066
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|16106049|gb|BI893789.1|BI893789
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCA
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCA
EST: gi|9258607|gb|BE346754.1|BE346754
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|26048689|gb|CA785142.1|CA785142
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGGAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAAGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|208252306|gb|GE048278.1|GE048278
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|5605872|gb|AI899970.1|AI899970
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|19934755|gb|BQ079785.1|BQ079785
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|58016974|gb|CX703716.1|CX703716
EST:     CGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: CGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|7588237|gb|AW704037.1|AW704037
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTGTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAAGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|9440465|gb|BE440969.1|BE440969
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|209729806|gb|BW658611.1|BW658611
EST:     TAGC-TTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: TAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|209719123|gb|BW659400.1|BW659400
EST:     TGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: TGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|6454405|gb|AW185088.1|AW185088
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|22525618|gb|BU084429.1|BU084429
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|58016657|gb|CX703399.1|CX703399
EST:     CGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: CGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
EST: gi|21637832|gb|BM107987.1|BM107987
EST:     GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT
genomic: GACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGTTATGTCGTAGGT