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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCGCCTGCCTGTTGCCTACCATGGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagttttgatgctaactgtaaacttttctggttgagtttgtgcttgcttgcttaagcagcttttgaatcttctgtttttttataagtcttatggt...

Basic information

species Glycine max
transcript GLYMA09G01270.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208298210|gb|GE095847.1|GE095847
EST:     ATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: ATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|254346898|gb|GR856620.1|GR856620
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|6567242|gb|AW234853.1|AW234853
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|213601975|gb|DB976222.1|DB976222
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|151410471|gb|EV280286.1|EV280286
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|7924174|gb|AW830200.1|AW830200
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCGCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|15664491|gb|BI701862.1|BI701862
EST:     GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|208203370|gb|GD998810.1|GD998810
EST:     TTTCCGGAACAGATATTGTCCGGCCAAG                         AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: TTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: gi|192327116|gb|FK015508.1|FK015508
EST:     GGACGGGCATCTTCTGTTGTTATTTCCG-AACAGATATTGTCCGGCCAAG                         AG-TCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT