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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatctatgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag

Basic information

species Glycine max
transcript GLYMA09G01050.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatctatgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||| ||||| || |  || || || || ||||||||||| ||||| |||||||||||||| |||||||| || || ||||||||||||||| | |||||||| | |     |   | | |   ||| | |  | |   ||||||| |  |||     || |  |  ||||  ||     |   ||  | |||  |  | |   | || |                                                         
AAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTGTCATTGGTGGTGATGATTCAAACACAAACGCATGCCTTCTTGCTGAGTACTTCAGgttggcccctaatatgtgtaacc-ctgttct--tttgcttcttaggcaattttc----tttagttgctgttgacaaa---gacctttgtgtactgttgatgctctgtcaa---------------------------------------------------------

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatctatgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccat-ttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||| ||||| || || || ||||| || |||||||| || ||||| |||||||||||||| |||||||||||||| ||||| |||| |||  | || ||||| |     ||| |   |   || ||   |    |   | | |||  | || |||   | | ||   |||    ||||  |||||  |    |||||    ||  || |  |||||| |    ||  ||| | || |   |                          
AAGCTGAAGACACGGCCAACAAGCTTGATTTGGATGGACTTGTTGTCATTGGTGGTGATGATTCAAACACCAATGCCTGCCTCCTTGGTGAATACTTTAGgttggct---gctaacgctgtgttttgacct---ttcaatataaggctgattgtgaatataacattgcgttggt-tgtttcttttttctgcttattcacaagcaaatcaaaattatgatttcaaattatgaacttgctccatag------------------------

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtctt--agctgaattttatttctggtgtaatctatgtcttagg---aagcttttgatattgaaa--tcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||| ||||||||||| |||||||| || ||||||||| | || ||||| ||||| ||||| || ||||||||||| |||||||||||||| || |||||||    |||  || ||||| |  | | | |     | | | |||||||   |||   ||| | |||||    |||||   ||   |  ||  || ||     |  || |  |  |   ||||  |  || ||| | |                                     
AAGCTGAAGAAACAGCAAAGAAGCTTGATTTGGATGGGTTGGTGGTTATCGGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttgcagttgaatctgttatgttgaaacttatttatcttaggcgaaagtagttgttcttgaagatccatgtgaccagaatctttaatatttgctgattcagcatttgacttattatctacttgtataattag------------------------------------

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatcta-tgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||| ||||||||||||  |||||| || |||||||| ||  |||| |||||||| |||||||||||||| ||||| |||||||||||||| || || |||| ||    || | |||||| ||  | |  ||||| | | ||| |||  |   || |  | |  ||||  ||| | |  |  | |||  | |   ||                                                                       
AAGCTGAAGAAACAGCTGTGAAGCTTGATTTGGATGGCCTACTTGTCATTGGTGGAGATGACTCAAACACAAATGCTTGCCTTCTTGCTGAAAACTTTAGgtgtggtacaggtcaattttgttgataggataatcaagtttctaagggggaactttagttggcgatcagctttgccttcttttattttttctttttttct--------------------------------------------------------------------

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatctatgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||||||||| || |||  |||||| |||||||| ||  | || ||||||||||| || ||||| ||||| ||||| ||||||||||| ||| ||||||||||          | ||| | |||        |||||      |    | ||||||| ||  | ||   || |    |                                                                                         
AAGCGGAAGACACGGCTGTGAAGCTCGACTTGGACGGCATTGTAGTTATTGGTGGGGACGACTCCAACACGAATGCCTGCCTTCTTGCGGAGTATTTCAGgtt-------atagtattctctttt-------atctagaaaaaaaagtgtttttgatgttcga-tcgctttctgtcatccag-------------------------------------------------------------------------------------

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ13842 (Selaginella moellendorffii), 5'ss of exon 5
AAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCGTGCCTTCTTGCTGAGAATTTCAGgtttgtcttagctgaattttatttctggtgtaatctatgtcttaggaagcttttgatattgaaatcatgttttcatgttggtttttaatttacattcaaggacatttccatttatgaatatgcatagtgatcctgtttgttcaatgctttaatatggattcatgcag
|||||||||| || |||  |||||| |||||||| ||  | || ||||||||||| || ||||| ||||| ||||| ||||||||||| ||| ||||||||||     |||     | || | ||| |   ||          |    | ||||||  ||  | ||   || |    |                                                                                         
AAGCGGAAGACACGGCTGTGAAGCTCGACTTGGACGGCATTGTAGTTATTGGTGGGGACGACTCCAACACGAATGCCTGCCTTCTTGCGGAGTATTTCAGgtt----atagtattctcttttatctagaaaaaa---------aaagtgtttttgacgttcga-tcgctttctgtcatccag-------------------------------------------------------------------------------------