1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagtttttctgattgatcagcgcatataataataataataattattattaaccttatctactaagcattgtggctgaagctaatatattgatatttcttggtttgtgttaatatag
species | Glycine max |
transcript | GLYMA09G00820.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|11274090|gb|BF324458.1|BF324458
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|13480641|gb|BG509984.1|BG509984
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|13478414|gb|BG507901.1|BG507901
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|16349454|gb|BI975049.1|BI975049
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|17401365|gb|BM178147.1|BM178147
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|8282721|gb|BE020282.1|BE020282
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|23732895|gb|BU764626.1|BU764626
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|254326714|gb|GR832866.1|GR832866
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|7925908|gb|AW831934.1|AW831934
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|192299784|gb|FG987800.1|FG987800
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|13563033|gb|BG551253.1|BG551253
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCEST: gi|17023955|gb|BM094989.1|BM094989
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagttttt ... gttaatatagGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagtttttctgattgatcagcgcatataataataataataattattattaaccttatctactaagcattgtggctgaagctaatatattgatatttcttggtttgtgttaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG