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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAGAATGGGGGGGAGCTTGTTTTTGGAGGTGCTGATCCTGCTCACTACAAGGGCAAACATACTTATGTACCAGTTACACGGAAAGGATATTGGCAGgttagtatcaacaaatttgtttggtatcaacatatcaacatacttgtactctgtgatgtattattaatcctgaaatagttgactacctggtattaactat...

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g49200.2 (Oryza sativa), 5'ss of exon 5
AGAAGAGAATGGGGGGGAGCTTGTTTTTGGAGGTGCTGATCCTGCTCACTACAAGGGCAAACATACTTATGTACCAGTTACACGGAAAGGATATTGGCAGgttagtatcaacaaatttgtttggtatcaacatatcaacatacttgtactctgtgatgtattattaatcctgaaatagttgactacctggtattaactat
 ||||   | || || ||  |||| ||||||||    ||||||   |||||||||||||| ||||| ||||| |||||  | | ||| ||||||||||||||| ||         | || |  || ||   |        |  ||      | ||||||| | ||     |||  | ||  |                  
TGAAGGAGAAGGTGGTGAAATTGTGTTTGGAGGAATGGATCCTAGCCACTACAAGGGCAACCATACATATGTTCCAGTCTCTCAGAAGGGATATTGGCAGgttggtcctgtt---tctgctaagt-tctgta-------gtgttttcgacatttgatgtaatgtttgcattgactttgtgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     ACAAGGGCAAACATACTTATGTACCAGTTACACGGAAAGGATATTGGCAG                         TTTGACATGGGAGATGTGCTTATTGCTGGTAAACCCACTG
genomic: ACAAGGGCAAACATACTTATGTACCAGTTACACGGAAAGGATATTGGCAGgttagtatca ... tcctgaacagTTTGACATGGGAGATGTGCTTATTGCTGGTAAACCCACTG