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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACTGTTGGCCAGTTTGTATATGTTGTCCGCAAAAGGATTAAGCTCAGTGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTGgtaagtatccagtcatgccaaatgattttttttttacctttatagcaatgattttatgtactaaatcccttgttgttgcag

Basic information

species Glycine max
transcript GLYMA09G00630.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594272|gb|DB973597.1|DB973597
EST:     TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTG                         CTGCATTGATGTCTGCTATTTATGAAGAAAATAAGGATCAAGATGGCTTTC
genomic: TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTGgtaagtatcc ... gttgttgcagCTGCATTGATGTCTGCTATTTATGAAGAAAATAAGGATCAAGATGGCTTTC
EST: gi|208259720|gb|GE059750.1|GE059750
EST:     TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTG                         CTGCATTGATGTCTGCTATTTATGAAGAAAAT
genomic: TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTGgtaagtatcc ... gttgttgcagCTGCATTGATGTCTGCTATTTATGAAGAAAAT
EST: gi|33389770|gb|CA852977.1|CA852977
EST:     TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTG                         CTGCATTGATGTCTGCTATTTATGAAGAAAATAAGGATCAAGATGGCTTTC
genomic: TGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTGCCTCCAACTGgtaagtatcc ... gttgttgcagCTGCATTGATGTCTGCTATTTATGAAGAAAATAAGGATCAAGATGGCTTTC