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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCTTGCGGTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattctgatatactgtctcttcatcactgcttgtatcgtgcattttggtttcacagcctatgctttttaaaattttctgcag

Basic information

species Glycine max
transcript GLYMA09G00500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g02380.t01 (Vitis vinifera), 5'ss of exon 5
GTAGCTTGCGGTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgt-attattctgatat--actgtctcttcatcactgcttgtatcgtg-cattttg-gtttcacagcctatgctttttaaaattttct-gcag------------------------
|| |||  | | || |||||||||||||||||||||||||| ||| |||||||||||||||| |  | |||||| |   || ||||    | |||   |  ||  || ||||||  ||  |       ||   || || | || |||   ||                        
GTGGCTACCAGAGGGAATGGTGCAACTACTGTTTCTGCAACCATGTTTTTTGCTTCAATGgtgacaactctgatcttagctttctcacagttactagatacatgttggcattttctgtaaccttaataatttgttatatatttctctcatagttattaagcaaaaaattcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734973|gb|BM528493.1|BM528493
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
EST: gi|298172196|gb|HO021788.1|HO021788
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
EST: gi|298176891|gb|HO026898.1|HO026898
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT