Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccag

Basic information

species Glycine max
transcript GLYMA08G47790.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47790.3 (Glycine max), 5'ss of exon 5
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatcattttttttcacttt--gccaattttttataattatgttcgagttgatctaaaacaaatatta-ggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccag
 || |||||||| || || || || ||||| ||||| |||||||||||||| || || ||||||||||||||||| |||||||| || ||||| ||||||||||| |||| |||| |||   ||   | ||||    | || | | | |   |  |       | |  | ||  || |  | ||||                                                                                                     
AGGTGCCAAGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCTTATATGTCGCTCCTCTCATCGGACCTGACACTgtaagtcatctttttgtttgtgttgaagtcaataggctgtattaacgctttggaagtatattcatagtttttgtgggtgtgatttag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G47790.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 6
GGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccag
 || |||||||| || ||||| || ||||| ||||||||||| ||||| ||||||||  |||||||  |||||||  |||||||||||||||||||||| || ||||        || | |  ||||           ||      | |  ||   |   ||    | | || ||      |||   | || | |    | |  | |     ||   | | |    |||   ||||| ||| ||   |    ||   |   ||                     
AGGTGCCAAGAAACAGAGGCTGCTGTGGGCTTCAACCAGTGTCAAGAATCCTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagcc--------ttcttatattgc-----------aacctcagttggatttggcagtaattgttgtcagcatc----ctaagaaagttatctaccattta-cttaaacagttccataaa----taaggtccataatttactgc-caacttcctttttcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336111|gb|GR841436.1|GR841436
EST:     CTGCCTATTCTGACACTTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|19345891|gb|BM890771.1|BM890771
EST:     CTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|192309108|gb|FG999391.1|FG999391
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|10236361|gb|BE805249.1|BE805249
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|208278775|gb|GE078750.1|GE078750
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254345896|gb|GR859543.1|GR859543
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254336568|gb|GR842747.1|GR842747
EST:     CTTATATGTTGCT-CTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|18733937|gb|BM527895.1|BM527895
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCA
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCA
EST: gi|58019244|gb|CX705986.1|CX705986
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|193475859|gb|FK442556.1|FK442556
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|209718568|gb|BW662686.1|BW662686
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254322566|gb|GR837980.1|GR837980
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|22525366|gb|BU084177.1|BU084177
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|208265460|gb|GE062652.1|GE062652
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTAT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTAT
EST: gi|151403066|gb|EV272876.1|EV272876
EST:     GGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: GGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254335504|gb|GR847032.1|GR847032
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254326693|gb|GR832845.1|GR832845
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|21887269|gb|BQ740482.1|BQ740482
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|208137463|gb|GD938883.1|GD938883
EST:     TTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: TTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254326692|gb|GR832844.1|GR832844
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|21639189|gb|BM140235.1|BM140235
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
EST: gi|21638754|gb|BM139800.1|BM139800
EST:     CAGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
EST: gi|12774774|gb|BG239722.1|BG239722
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|308098290|gb|HO760031.1|HO760031
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
EST: gi|6502287|gb|AW203660.1|AW203660
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|9899114|gb|BE608141.1|BE608141
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254336567|gb|GR842746.1|GR842746
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|15000882|gb|BI321696.1|BI321696
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|22525219|gb|BU084030.1|BU084030
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC