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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa...

Basic information

species Glycine max
transcript GLYMA08G45770.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa-
|||||||| ||||| |||||||||||||| |||||    ||||| |||||||| ||||  ||||||||||| ||||| || |  || || |  ||    ||| | |  |    ||   ||  |   |  |   || || |    |||   |||  ||  |  || ||| |||               |||   | ||| | 
AAGAGAGCCTCCAAGATCCGTAAACTGTTTAACCTCAAGAAGGAAGATGATGTCAGGACCTATGTCAACACTTACCGCCGCAAGTTCACAAACAAGAAGGgtgagacac----tgaacttgagaaatagtggtttctgaatcacact---tgagaaataatgttttctgaaacttgtttcttctgtttggatttttgacag

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttt---tatgttgtgtttaattttgtaa-ttgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa
|||||||| || || || || || || |||||||| |||||||||||||||||| |||||||||||||||| || ||||| || || || |||||| |||||| ||| |||| |   ||   | | |  | |||| ||||  || || |    |  |   || || |||| | ||    |   ||     |   |  | |    
AAGAGAGCTTCTAAGATTCGAAAGCTCTTCAACCTCTCTAAGGAGGATGATGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcctgatttcttatctttttaatatttacttttagaagtttataagtgaagggaacaaattgtat-aatttaatttaattcctacattgctttc---

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa-----
||||| || || || || || || || || ||||| || ||||||||||||||| |||||||||| ||||| || || || || ||||| || ||| |||||        ||||| | | || |  | ||| ||     |  |||    || | | |     ||  || || | |    |  |||| |     ||||        
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgt--------tggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcag

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgat-taaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa
||||| ||||| || || || ||||| |||||||| || ||||| ||||||||  | |||||||||||||| |||||  |  |||| || || ||| ||||||   |   |  |  | |    ||   | |  ||  ||| |  | |     |  | || ||  ||   |   |     |||| ||  |  | ||||    
AAGAGGGCATCAAAGATTCGCAAACTCTTCAACCTCTCAAAGGATGATGATGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttttaattttatgtctttcaatatgtttaagtactgaagtagcctacattaaaaaagtgggatgctattttaaaagagtattcttgatgtttt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306899|gb|FK002621.1|FK002621
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|26058968|gb|CA801882.1|CA801882
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGGAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|214008706|gb|DB987485.1|DB987485
EST:     TGATAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTATTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|254318040|gb|GR832208.1|GR832208
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|254318039|gb|GR832207.1|GR832207
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAA-GCTG                         GGAAAAAG-TGAGCAA-GCTCCCAAGATACAA-GACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|14008832|gb|BG725436.1|BG725436
EST:     TGTTAGGAACTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|208121929|gb|GD918938.1|GD918938
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|208332906|gb|GE131467.1|GE131467
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|4436991|gb|AI522856.1|AI522856
EST:     TTTTAG-AAGTATGTCA-CACCTACCGTCGTACATTTACGACANAAGCTG                         GGGAAAAAG-TGAGCANAGCTCCCAAGATAC
genomic: TT--AGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGG-AAAAAGGTGAGCAAAGCTCCCAAGATAC
EST: gi|192329066|gb|FK021419.1|FK021419
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|151413141|gb|EV282949.1|EV282949
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGATAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192306900|gb|FK002622.1|FK002622
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192321666|gb|FK014010.1|FK014010
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192333815|gb|FK025076.1|FK025076
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|209714919|gb|BW682084.1|BW682084
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATNTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|213594107|gb|DB981407.1|DB981407
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192332922|gb|FK025019.1|FK025019
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAG-TGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192333814|gb|FK025075.1|FK025075
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192319434|gb|FK005874.1|FK005874
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|151396097|gb|EV265974.1|EV265974
EST:     TGTTAAGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192332923|gb|FK025020.1|FK025020
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|213594717|gb|DB975479.1|DB975479
EST:     ACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTAACACGATACAAAGACTGGTCACTTAACTTA
genomic: ACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|208321332|gb|GE119497.1|GE119497
EST:     ATGTCAACACCTTACCGTTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: ATGTCAACACC-TACCG-TCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|5605874|gb|AI899972.1|AI899972
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACACAAGCTG                         GGAGAA-GGTGAGCAAAGCTCCCAAGA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGA
EST: gi|213594190|gb|DB963787.1|DB963787
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192332467|gb|FK024228.1|FK024228
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192319433|gb|FK005873.1|FK005873
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|207694353|gb|GD677836.1|GD677836
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAA-GGTGAGCAAAGCT
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCT
EST: gi|37995658|gb|CF807247.1|CF807247
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|193338551|gb|FK304738.1|FK304738
EST:     AACACCTACCGTCGTACTATTTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: AACACCTACCGTCGTAC-A-TTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|193606341|gb|FK555610.1|FK555610
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|151412215|gb|EV282027.1|EV282027
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCTTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCCTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|213607341|gb|DB957149.1|DB957149
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|151413002|gb|EV282810.1|EV282810
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|207736466|gb|GD712639.1|GD712639
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA
EST: gi|192327798|gb|FK022399.1|FK022399
EST:     TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG                         GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCCTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccc ... ttggttacagGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaga