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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaattctattgttatatttcatttgttgccttaatattgttttgttgaaatttagtctgcattttatcatcattttgttggttttgtagtacagttttatgtgccttgtattcaaaattctatttgtctatttattaaggttttctcctttgtgaaaaatcag

Basic information

species Glycine max
transcript GLYMA08G43230.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43230.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g00910.t01 (Vitis vinifera), 5'ss of exon 5
GCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaattctattgttatatttcatttgttgccttaatattgttttgttgaaat-ttagtctgcattttatcatcattttgttggttttgtagtacagttttatgtgccttgtattcaaaattctatttgtctatttattaaggttttctcctttgtgaaaaatcag
||| || |||||||| ||  |  ||||||| || || | ||  ||||| |||||||||||||| |||||||||||| | ||||||||| |||||||   |||||| |||  |    |||| ||        ||    |||    |  ||||    | ||| || |||||| |     ||    |   ||||||    || | | |||                                                              
GCTAGCTAAACATGTTAAGCTAGGCTGCCCCAATCTCGAGTTTTCTGGTTTAATGACAATAGGGATGCCAGACTATTCATCAACTCCAGAGAACTTCAGGgtgat-aatcttgcacttat-ttgggcaccatgggaaaatgaactcatgttatcttgttactcagcatttga----aatgagatgaattttgtttctca-tatgatg--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530250|gb|EH258384.1|EH258384
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         ACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
EST: gi|209728275|gb|BW658487.1|BW658487
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         AGCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
EST: gi|21285679|gb|BQ473550.1|BQ473550
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         AGCCTATCAAATTGCAGAACTGAAGTATGCAAGGCAC
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCAC
EST: gi|13180762|gb|BG352102.1|BG352102
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         ACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
EST: gi|17401932|gb|BM178714.1|BM178714
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         ACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATG
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATG
EST: gi|22525413|gb|BU084224.1|BU084224
EST:     TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAG                         ACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG
genomic: TAATGACAATAGGAATGCCAGACTATACCTCAACTCCACAGAACTTTCAGgtgatgaatt ... gaaaaatcagACCCTATCAAATTGCAGAACTGAAGTATGCAAGGCACTTGAAATGCCCGAG