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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGCTCAATTCTTTCCCAATGTGCCTATTGATGTTGAGAATTCTCCTAGTTTTGTTGCCATCAATgtaagtttcttgaatttttttcctccagtctttgtcattgagggttagtaaaataggtgtttatatgatacttttctgtgtacctttttttaacag

Basic information

species Glycine max
transcript GLYMA08G43200.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGCTCAATTCTTTCCCAATGTGCCTATTGATGTTGAGAATTCTCCTAGTTTTGTTGCCATCAATgtaagtttcttgaatttttttcctccagtctttgtcattgagggttagtaaaataggtgtttatatgatacttttctgtgtacctttttttaacag
| | || || ||| |||| ||| |  | ||||   | | ||| ||||| ||     ||||||||||   |||||||||||| ||| ||||||||||||||||||      |           ||    | ||| |   |     ||| |    | | |    | |   || || | | |     | ||||||||||
GTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattg--ttgtttttaacag