Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaactctttattatttgtaacttgaaaaattattgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt...

Basic information

species Glycine max
transcript GLYMA08G42730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 5
TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaactctttatt-atttgtaacttgaaaaattattgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt---
|||| |  || |   |  | ||||| |||||  ||||||||||||| || ||||| |||||||| |||||||| |||||||||||  | ||||||| ||||| || |  | | | | |  |  || |  ||  || ||   ||  | ||| |   |    ||   ||||  |    | |   |  | |  || ||  |      
TTGACCATAATAACAAGCGTATGGCATGGATAGAGTGGAGTCATCCAAATATGCCCTGGGATAAGTCAGAACTTTGGGTTGGCTACTTCTCTGAAAGCGGgtaagcaacattatctttagaaatgcatattagaacat-gctgcctttttcttcca---atcaggtaatataaacaaaacaaatgttacattcgggatgacaga

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaact-ctttattatttgtaacttgaaaaattattgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt
|||||| ||| |   |  | || || |||||| | ||||| ||||| |||||||| ||||||||||||||||| |||||||| ||  |  | |||| ||||| | |  || |   || | | |   |  ||  || |   || ||| ||    | |    | |  | | | |    || ||    |   | |    |    
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtttttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa-

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 5
TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaactctttattatttgtaacttgaaaaattattgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt--
| || |||||| | ||| |  |||| |||||| | ||||||||||| || ||||| ||||||||| | |||||||||||||| ||||||||||| || |||||||||  | ||  | |   ||||   ||       || ||  | | |   ||  | | ||  || ||    ||||| | ||||  |||| | || | |  
TGGACCCAAAAGGGGAACGGTTGGCATGGATTGAATGGAGTCATCCTAATATGCCATGGGATAAAACGGAACTATGGGTTGGTTATATTTCTGAGAATGGgtgagtatgattccctttc--ttgtgcatttcttctctagtgcatttcttgtttccaagactgatatttccattgacactcaaattttcttggcttgtgtat

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 5
TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaactctttattatttgtaacttgaaaaatt---attgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt
| ||  | ||| | ||| | || || |||||| |||||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||| || || |||||||||| | ||  |  | | ||   |   |    |    | ||| | || || || |  |  |  |  |||   |   |||  |||  |||||  ||    
TGGACTCTAAAGGAGAACGGATTGCATGGATTGAGTGGAGTCACCCTAACATGCCTTGGGATAAAGCAGAACTTTGGGTTGGCTATATTTCAGAGAATGGgtgagtaggattcccttctgtatgctgccatagctctctccagtgtcttttcattttctgaggattatctttgcattagaaatccaattttcttttctta---