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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGGAGTTTGGGGAAATGAAGgttgctcggtgtagcaaaattatttcattgaaccattcatttaataaggcttatagaatcagatgtttatttacttattcatgatccaattaagagaatgcttatttcctcaatcggtcatttttcag

Basic information

species Glycine max
transcript GLYMA08G41630.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701051|gb|BW652163.1|BW652163
EST:     TGGCCTGGAGTTTGGGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: gi|10231875|gb|BE800763.1|BE800763
EST:     TGGCCTGGAGTTTGGGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: gi|22524681|gb|BU083492.1|BU083492
EST:     TGGCCTGGAGTTTGGGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: gi|31464900|gb|CD406928.1|CD406928
EST:     CTGGAGTTTGGGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: CTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: gi|14205390|gb|BG839068.1|BG839068
EST:     TGGCCTGGAGTTT-GGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAA-GGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
EST: gi|9259707|gb|BE347854.1|BE347854
EST:     TGGCCTGGAGTTTGGGGAAATGAAG                         GGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG
genomic: TGGCCTGGAGTTTGGGGAAATGAAGgttgctcggt ... catttttcagGGTATATTGATGGTCTGGGAGATGCTGTTGAAAAGGGACTTGTGAAGGCTG