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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttgtctatcaatttgtttgacttatgttatgtaccaaaattaaagatgaattaaaatgtaaagggatttaatgtcataaacacaaaccttatttcaaatttgtcatcaaatatcatccatttagtttactcgcatttttgttgtttcag

Basic information

species Glycine max
transcript GLYMA08G39510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0127g00720.t01 (Vitis vinifera), 5'ss of exon 5
CTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgttt---aatttgtctatcaat-ttgtttgacttatgttatgtaccaaaattaaagatgaattaaaatgtaaagggatttaatgtcataaacacaaaccttatttcaaatttgtcatcaaatatcatccatttagtttactcgcatttttgttgtttcag
||||||||||||||||||||| || || || ||||||||  | || || || || ||| |||||||||| || || ||||||||||| ||||||||  ||||     ||     |  ||||| || ||| |||    || ||||      ||  | | |  ||  ||   ||||   ||   | | ||||   || | |  |||||||                                                    
CTCAGACTCTCGAGTTTGCCCTTCACATATCCTGGATTTTCAGCCAGGGGAGGCATTTATGGTCCGAAACATTGCGAACATGGTTCCGCCATATGATCAGgtcctaaaaaaccccactcaatatttttttactctgtttttgtatt----ttgtacaggtcttggaaatgaaag---ttctctattataattgcacagc--atttcaat---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284423|gb|AW597014.1|AW597014
EST:     AAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATACTTTCTTACATTTA
genomic: AAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|20813035|gb|BQ297513.1|BQ297513
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|19271202|gb|BM887458.1|BM887458
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|192305002|gb|FG997128.1|FG997128
EST:     AAGCCTCTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
EST: gi|192297727|gb|FG989962.1|FG989962
EST:     AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAG                         ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA
genomic: AAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGgtttaatttg ... gttgtttcagACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTA