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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacatgatgaagtacatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta...

Basic information

species Glycine max
transcript GLYMA08G39340.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g50260.1 (Oryza sativa), 5'ss of exon 4
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacatgatgaagtacatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta
|||||||| | | ||||| | ||| ||||| || ||  | || || || ||||||||||||  ||| ||||||| |||||||||||||||||| ||||||||||   || |        |||   |  | |    | |  ||||    ||| |     ||| |||  | || | |    |||  |  |||          
TCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGgtaag-cataatctggtagatgatgtgactagtcca-acaatgaccaccatatacacagagctaa--aaaacactgacattcctatgcag----------

upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g44970.1 (Oryza sativa), 5'ss of exon 6
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaa-atatgagtaatgcaatgtctttcccaagttacatgatgaagtacatgtttcacgagttaaccagaaaatt-tgacttcaaaatcagtttgttgtta
 |||||   ||| ||||| | ||| |||||||| ||  ||||||| || ||||||||||||  ||  || |||| ||||||||||||||| || ||||||||||  | ||   |  |  |    |   |  |   ||| | ||     |    || ||       |  ||||||   | | |  |  |||    |    || 
CCTAGGCCGGGACAACACAAAAGCATGTGTCTCCAATGTTACTGTAAGAGATGTCAACATGTTCAGAACCATGACTGGTGTCAGAATCAAGACCTGGCAGgtaagcacatccctt-tataggtacaaacaaatcctacttaataggacagtcattacattgtcacaaaagaaaaggataaatatatcatcttcataaactt-

upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G037431_T01 (Zea mays), 5'ss of exon 6
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaa-------aatatgagta-atgcaatgtctttcccaagttacatgatgaagtacatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta
 |||||    || ||||| | ||| ||||| |||||  |||| || || ||||||||||||  ||  || |||||||||||||||||||| || ||||||||||       || ||  ||| |  |||  |  |     |    ||      |||||| |  | | |    ||    ||||    |||  ||||   |  |       
ACTAGGCCGAGACAACACAAAAGCATGTGTATCAAATGTTACAGTAAGAGATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttgagaacatatgtacaaacaaaattctaattcaacatcagacattagtaca-gaataatgtcacaaaagaaaaaaaaaactaaaaaaaaggaat-------

upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G179696_T03 (Zea mays), 5'ss of exon 6
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacatgatgaagt--acatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta-
 |||||    || ||||| | ||| || || |||||  |||| || || ||||||||||||  ||  || |||||||||||||||||||| || ||||||||||  | |||| ||   || ||       || ||  |     || |  ||||    ||  |||  |  | |     | |  ||| ||         ||  | 
ACTAGGCCGAGACAACACAAAAGCATGCGTATCAAATGTTACAGTAAGAGATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagct-tgag-aacataa-gtacaaataaaattctaattctaattcaacatccggcattagtacataatagttaataatgtcacaaaagaaaatctgaaaa

upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacatgatgaagt-acatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta
 || || || || |  |||| |||||||||||| ||||| || ||| | ||||||   ||||||||||||||||  |||||| | ||||| || ||||||||||    ||| |||  |      ||||  ||   | | ||   ||| |  || ||    || | |  | |        ||||||  | | |         
CCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAGTCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGgtaa----tgattaacac------tttcataaaaaaaacgaatgagtgatttggtttggaagctcatgaaacttaacagcttcaatgtgaatacag-----

upper sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0127g00400.t01 (Vitis vinifera), 5'ss of exon 7
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaa----aatatgagtaatgcaatgtctttcccaagttacatgatgaagtacatgttt-cacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta
 || |||| ||||  ||||| |||||||||||| |||||||| ||| | ||  |||  ||||||||||||||||| |||||||| ||||| |||||||||||||    | ||| | || |  |    |     |  || ||  | |||| |  | ||   ||| ||  |  ||| |  ||  |  | ||||| |||||    || 
ACTTGGAAGGGATGGCACCAAAGCCTGTGTCTCCAACATTACGGTCCGAGACATCATTATGCACAACACAATGAACGGTGTCAGGATCAAGACATGGCAGgtaagcctactattattactcaagaaacaggatcgtgt-actagctgaattttaagtagacacaagcca--cagcattttaaatattaaaat-agttttcactt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901271|gb|BE610239.1|BE610239
EST:     CAAAAGATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: CAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193567401|gb|FK522842.1|FK522842
EST:     GCACAACACAATG-ATGGTGTCAGAATCAAAACATGGCAG                         GGTGGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
genomic: GCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGT-GGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
EST: gi|193562738|gb|FK520725.1|FK520725
EST:     TGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: TGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|208111596|gb|GD909650.1|GD909650
EST:     AACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: AACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|207805189|gb|GD780686.1|GD780686
EST:     TGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGNGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: TGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|15204567|gb|BI427335.1|BI427335
EST:     ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193414592|gb|FK379300.1|FK379300
EST:     ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193307654|gb|FK270654.1|FK270654
EST:     TGTCAACATGCTACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATA
genomic: TGTCAACATGC-ACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATA
EST: gi|208150171|gb|GD947346.1|GD947346
EST:     ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: ATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193568946|gb|FK526151.1|FK526151
EST:     CAACACAATGAATGGTGTCAGAATCAAAAACAATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
genomic: CAACACAATGAATGGTGTCAGAATC-AAAAC-ATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
EST: gi|193468145|gb|FK430906.1|FK430906
EST:     GCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: GCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193471265|gb|FK438158.1|FK438158
EST:     CAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: CAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|193726409|gb|FK656125.1|FK656125
EST:     GCACAACACAATGAATGGTGTCAGAATCAAAAACAATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
genomic: GCACAACACAATGAATGGTGTCAGAATC-AAAAC-ATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTC
EST: gi|17400641|gb|BM177423.1|BM177423
EST:     AACACAATGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: AACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
EST: gi|208305174|gb|GE102273.1|GE102273
EST:     ATGCACAACTACTAATTGAATGGTGTCAGAATCAAAACATGGCAG                         GGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT
genomic: ATGCACAAC-AC-AA-TGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatg ... atatctgcagGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCT