1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTGAAGCTTTGAAAGAAGAAAATGCCACTCTCCGATCAGAAGTGAGCCAGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttgaaatctttatatactttgatttttgtctattttgcaaattggcaaccactgttgcccctacaaagttatacctactatcagtaacactca...
species | Glycine max |
transcript | GLYMA08G34280.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGATCAGGAGTGAGTATGAGCAGCTACGTTTTGAGAATGCTGCCCTCAAG GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATTTTEST: gi|58015167|gb|CX701909.1|CX701909
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
EST: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATTTTEST: gi|58017518|gb|CX704260.1|CX704260
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
EST: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG GAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
genomic: AGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttg ... ctgattacagGAGAGACTTGGGGACATACCTGGTGTCGCGACGCCTGGGAAGGAGGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAAGCTTTGAAAGAAGAAAATGCCACTCTCCGATCAGAAGTGAGCCAGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgatttttgaaatctttatatactttgatttttgtctattttgcaaattggcaaccactgttgcccctacaaagttatacctactatcagtaacactca
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC