1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGgtacatggctggtttctttactcataagtagtatttctgtattgtccacctagtttcatgtgaaaagaagaaggaaatctttaagggtgtgtttggtttg...
species | Glycine max |
transcript | GLYMA08G28320.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAG ATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACEST: gi|151399665|gb|EV269536.1|EV269536
genomic: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGgtacatggct ... tcttcttcagATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCAC
EST: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAG ATATTTGAAACACCEST: gi|15815223|gb|BI787498.1|BI787498
genomic: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGgtacatggct ... tcttcttcagATATTTGAAACACC
EST: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAG ATATTTTGAA-CACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCA
genomic: ATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGgtacatggct ... tcttcttcagATATTT-GAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGgtacatggctggtttctttactcataagtagtatttctgtattgtccacctagtttcatgtgaaaagaagaaggaaatctttaagggtgtgtttggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG