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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattcttcataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag

Basic information

species Glycine max
transcript GLYMA08G27560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G071970_T01 (Zea mays), 5'ss of exon 5
TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATG---GTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattcttcataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag
    |  | |||||| | |||| ||| |||||||||||||| ||| | |||||  ||||||| |||||||||||  || | ||||| ||||   ||   ||||||||||        ||||||| | |       || | | ||||   |  |  |||             ||  ||    || | |   | |||     |    |   |                                        
---ACACAGTGGAACTTAGTTGCTCAGCATCCAAACTTTGATAATATCACTCAGTTGTTCAGCTTCAACTACAAACCACTTACTCCATATGGGGGTGGCATAAgtaagta-------aacttgtcttatagaaaagaat-agaaataaaccaacctacc------------tcccaacctctcctgatgtagtttgtctgtcccgtttcag---------------------------------------

upper sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattctt-cataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag
|| ||| | |||||| | || ||||| ||||| ||||| |||||||| ||| | || |||||||||||||||||  |  | | ||||||       ||||||||||    |||||    | |||  | ||| |   | || |  |  ||   | ||   || ||  | | ||   || |  ||  ||                                                             
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtt---tctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag------------------------------------------------------------

upper sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattcttcataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag
||  |  |||||||  | |||||||||||||| |||||||| ||||| || ||  | |||||||| || ||||||||||| ||||||||||   | ||||||| ||   ||||   |  | ||  ||||    |  |     | | |     |  |    |||    ||   || | ||| |        ||| || ||   || |    | |||  | | |  || |  ||               
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgc-aactgttcgt-------cttaatcctaacatctt----gtgaatatgaattttggttatacag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16343816|gb|BI969411.1|BI969411
EST:     TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA                         ATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTANACC
genomic: TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcga ... cttttaacagATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
EST: gi|254325278|gb|GR838159.1|GR838159
EST:     TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA                         ATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
genomic: TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcga ... cttttaacagATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
EST: gi|9566077|gb|BE475515.1|BE475515
EST:     TCAACTGTTCACTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA                         ATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTGTCTAAACC
genomic: TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcga ... cttttaacagATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
EST: gi|22930803|gb|BU547950.1|BU547950
EST:     TCAACTGTTCAGTTTCAACTACAAGTCATTGACTNNNTATGGTTCAATAA                         ATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
genomic: TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcga ... cttttaacagATGATACTGCAATGCTGTGGGGAGTTAAGTTCTATAATGATTTTCTAAACC