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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAGgtgcgtacatatatataataagctttcaggcactctttttggttaagtttttaagaaagtaatttttagctaagtttaagaagttttatggagaaagtta...

Basic information

species Glycine max
transcript GLYMA08G24510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24510.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 5'ss of exon 5
GGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAGgtgcgtacatatatataataagctttcaggcactctttttggttaagtttttaagaaagtaatttttagctaagtttaagaagttttatggagaaagtta
|| || ||||  ||| ||||||| ||||| || |||||||||||| | ||||| || |||||||| || |||||||| || ||  |  | | |  |  |  |  |||       | | |    || | | | | ||| |    | ||    | | || |      |   |      ||   
GGTCGCTTCAAATACCAACCTGGGCAAGTAAGAGCATTTGGAATGTTAGCTGGAGGATCAGGCATTACCCCAATGTTCCAAgtaagaccctttccaacaccaattttt------tttatggcatttaatatgtgagacacctgtgttc--ttcaattcattgtcctcccttactgtag---

upper sequence: GLYMA08G24510.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
GGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAGgtg-cgtacatatatataataagctttcaggcactctttttggttaagtttttaagaaagtaatttttagctaagtttaagaagttttatggagaaagtta
|| || ||||  ||| |   ||||||||| ||||||||||||||| | ||||| || |||||||| |||||||||||||| ||  | | ||    |    |     ||  |  |     |      ||    || |      | |  | ||  |  ||       || |   |  | ||   
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag---