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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag

Basic information

species Glycine max
transcript GLYMA08G24160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   || | || ||   |||||||||| |||| ||| | |  |  || |   || |  |||     ||     | | || || ||       | |||  |   |  ||  | |    ||||  | |  | |||    ||     
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAGgtttgtg-gtgtagca--atctactcaagtgcttgaatttaacatctacttctgc-acttaatgcattttacatcctaaggccatcttgcataaaacttgga-at-----

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01290.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttg--gaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
 || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| || | || || ||||||||||||||||| |||  | ||  | || || |  |   |  |    ||   | ||  || ||||| | ||        ||  ||| |  |||   | |   | |||   | |  | ||       
CTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAAgttcttgaatttaacatctactttacacttaatgtattttacatattaagatcttcttgcatggaatttggaatttgtcacattgactcaaaacagagtt-------

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||||||||| ||| | |     |    | || |  |||     ||     | | || || ||       | |   | || | || | || |    |||   | |||| | ||   | | | 
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgt---gctgtagtcatctactcaagtgcttgaatttcacatctacttctgcacttaa---tgcattttaca-tcctagggtct---tcttacataaaacttggaat

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || ||   ||||||||||||||| ||| | |     |    | || |  |||     ||     | | || || ||       | |   | || | || | || |    |||   | |||| | ||   | | | 
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgt---gctgtagtcatctactcaagtgcttgaatttcacatctacttctgcacttaa---tgcattttaca-tcctagggtct---tcttacataaaacttggaat

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   |||||| |||||||| ||| | |     |    | || |  |||     ||     | | || || ||      || ||| ||   |  ||| | |     |||  | |  | |||    ||     
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAGgtttgt---gctgtagtcatctactcaagtgcttgaatttcagatctacttctgcacgt-aatgtatttttcatactaaggtcttcttgcataaaacttgga-at-----

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag
 || ||||  ||||||| ||||  |||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||| |||     ||  |  |     |||   | ||     | | || || ||       | ||| ||   |  ||| | |     |||  | |  |  ||    |||    
CTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAGgtttat---gctatgtccaccaactcaagttcttgaatttaacatctactttg--cacttaatgtattttacatattaagatcttcttgcatggaatttgga-att----

upper sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtat-----------atttgattaa---ctttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatct---cacttttaccttaattattgtag--------------------------------------
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||| ||||| ||| |           || |  | ||   ||| | |||  ||     ||  | |    ||  |||| |  |  |          |  ||||   ||  |  |   |||    ||   || | ||  ||                                      
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcattttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag