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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaatatttttaacttctttcatcttatgttgttgtcagtttgcttattttattcatctgcaaattttctcttattcaagttattgacttttgagactttacttttccag

Basic information

species Glycine max
transcript GLYMA08G23740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23740.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g23180.1 (Oryza sativa), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttga--aatcaatatttttaacttctttcatcttatgttgttgtcagtttgcttattttattcatctgcaaattttctcttattcaagttattgacttttgagactttacttttccag
 ||||||||||| ||||||||||||||||| ||||| ||||||||| | ||||| ||||| ||| ||||  ||||||| || ||||| |||| | | || ||||  |  |||||     ||||||   | ||| |  ||| ||  | | ||    || || ||   |  |    | | |||   | || ||  | || | |  |   |   ||| | ||   ||               
AGAAAGATTTGTATGGTCCTTGATATCTGCAGTTGGAATATTTTGTTTGGGTTCAGGTGCTACCATTGTGCATGGAGTTCAAAACTTATGGAATTCGCAAgtatg-atgcaaatgtatcatttgattcaccaaaagattttaca-catgcactccatcttattagaaaatc---tttgttacctaactacagttgttatatcgt--gacacatttatttgacag---------------

upper sequence: GLYMA08G23740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaatatttttaacttctttcatcttatgttgttgtcagtttgcttattttattcatctgcaaattttctcttattcaagttattgacttttgagactttacttttccag
 ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| |||||||| ||| | ||||||||||||||||||||||||| | |   |||| ||  |   ||      | |||  |  |  || |   ||  ||| ||||| ||   || | || |  ||  || ||    ||      | |||    |||     |||    || | ||               
AGAAAGATTTGTATGGTCTTTGATATCTGCTGTTGGCATCTTTTGCCTTGGGTCTGGTGCTACCATAGTTAATGGAGTACAGAACTTGTGGACTTCTTCGgtaattttcggcat--atcttgtgactttgacgttatctgcta-tttgatcttttgg-attattagat-actctttgtacatttccttggttgttcatcaattttgactatc--tttctcag---------------

upper sequence: GLYMA08G23740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 5'ss of exon 5
GGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaaccaaattggatatttgaaatcaatatttttaacttctttcatcttatgttgttgtcagtttgcttattttattcatctgcaaattttctcttattcaagttattgacttttgagactttacttttccag
||||||||| ||||||||  |||| ||||| ||||| ||||||||||||||||||||||| ||  ||||| |||||||||| || ||||||| | |||| |||  | |   || |   | | ||   ||  |  ||  |  ||||| |   ||   ||| | |     || ||  || |||  |  |||  |  | ||                                       
GGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAATTTGTGGACTTCACATgtaactta--gaact---tctctggt-tctctccttccagattcttaccagttgctttggtata----tggtttattgatttgtgagcatgtcctttccag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300735|gb|FG991117.1|FG991117
EST:     GTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAG                         CCCCCTGAGAATATGAAATATGCAGCTTTGGTGATATGTGGTTCATTCGTC
genomic: GTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaacc ... acttttccagCCCCCTGAGAATATGAAATATGCAGCTTTGGTGATATGTGGTTCATTCGTC
EST: gi|151393656|gb|EV263531.1|EV263531
EST:     GTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAG                         CCCCCTGAGAATATGAAATATGCAGCTTTGGTGATATGTGGTTCATTCGTC
genomic: GTTCTGGTGCCACCGTTGTTAATGGAGTACAGAACTTGTGGATTGCACAGgtatttaacc ... acttttccagCCCCCTGAGAATATGAAATATGCAGCTTTGGTGATATGTGGTTCATTCGTC