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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttaccaactatcctctttttcactggagctgcttaatttggttagaagccaagagacaattgtcagctaatttgagttttcaaactggtggtccag

Basic information

species Glycine max
transcript GLYMA08G23440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g14440.1 (Oryza sativa), 5'ss of exon 5
TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttaccaactatcctctttttcactggagc-tgcttaatttggttagaagccaagagacaattgtcagctaatttgagttttcaaactggtggtccag
    || ||  | ||| | |  || |||||||||||||| ||| | ||  ||||||||||||| ||  | |||||||||||||| ||||| |    |  |||    | |    ||| | | |  | ||  || |||     | | |  |||    | |  ||||||   ||| | |   |        
GTCGACTGGTCGCAAAATTGGTGAACCAGAGTTGTTAGAAGCAGTACGGCTGACAATTATAAACAACATGATTCAGTACCACCCAgtaagttccttatttatttcttatcaacctgcatcattatgaaaatgttta-----ctaaatgcaacctgctggaaatttg---tttgacatcag--------

upper sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac-caactatcctctttttcactgga---gctgcttaatttgg-----ttagaagccaagagacaattgtcagctaatttgagttttcaaactggtggtccag
|||||| || |||||||| || || || |||||| | ||||||||||||||||| |||||||| ||| |  ||||||| |||||||||  | |    || |||    || ||  || ||   ||  ||| ||   |     ||  |||    |      || | || |  ||  | |||   || | |||||||||
TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaattttctgaatttgtggtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298594|gb|FG988535.1|FG988535
EST:     TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG                         GAATCAAGTTTCCGGTTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA
genomic: TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac ... ggtggtccagGAATCAAGTTCCCGGTTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA
EST: gi|192326608|gb|FK017295.1|FK017295
EST:     TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG                         GAATCAAGTTCCCGGTTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA
genomic: TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac ... ggtggtccagGAATCAAGTTCCCGGTTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA
EST: gi|151405909|gb|EV275724.1|EV275724
EST:     TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG                         GAATCAAGTTCCCGATTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA
genomic: TAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac ... ggtggtccagGAATCAAGTTCCCGGTTAGCATTGGGAGCAGCTTTTGGGCTTCTGCCTCCA