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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTTCTGGTCGATACATATGTGCCGAAAGTTCGCTGCATCGTGGTGAGCTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAAgtaagctgtgttttttgtcttttctattctatattttattttatttgtggacagaatccaaagaattaaatgctccacacaaatgggttgaaaagttttg...

Basic information

species Glycine max
transcript GLYMA08G23310.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23310.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0070g00240.t01 (Vitis vinifera), 5'ss of exon 4
CAGCTTCTGGTCGATACATATGTGCCGAAAGTTCGCTGCATCGTGGTGAGCTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAAgtaagctgtgttttttgtc-ttttctattctatattttattttatttgtgga-cagaatccaaagaattaaatgctccacacaaatgggttgaaaagttttg
| || || || || ||| | |||||||| ||   ||| || || || ||  | ||||||||||||||||||||||| || ||||| || |||||||| |||||||  || | |   |||  | | |||| | | |  | |   |||| |    ||   ||| |       |||  |         |     |   | |||  
CTGCCTCCGGCCGCTACCTCTGTGCCGAGAGCGTGCTTCACCGCGGCGATGTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtctctcaagtcgctctttattttttttaatttcacatttatttttcattttcccattcccccaatttttttttttcttcccaagtttaattt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601954|gb|DB981860.1|DB981860
EST:     CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAA                         ATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA
genomic: CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAAgtaagctgtg ... acttgtgtagATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA
EST: gi|209725073|gb|BW663038.1|BW663038
EST:     CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAA                         ATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA
genomic: CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAAgtaagctgtg ... acttgtgtagATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA
EST: gi|213598748|gb|DB964286.1|DB964286
EST:     CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAA                         ATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA
genomic: CTTGTTGAAATTTTGGCCAAGTTTTTTCCCGAGTACCCAATTCCTACCAAgtaagctgtg ... acttgtgtagATGTTCAGATGAAAAGAATCCGAGAGTAAAACCCTACATATTTTCAAATCA