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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCTCAAAAAGCTAATTGAAGCGAATCCCTTATTTCGTGACAAACTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttccgatgtccaagcatatttatttctccatatttgtgctttgaatatgaaataactttctggtacccaaattcaatcatttagtatcgttat...

Basic information

species Glycine max
transcript GLYMA08G22910.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 4
TTGAGCTCAAAAAGCTAATTGAAGCGAATCCCTTATTTCGTGACAAACTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaattt--ttccgatgtccaagcatatttatttctccatattt--gtgctttgaatatgaaataactttctggtacccaaattcaatcatttagtatcgttat-
|||||||||||||||| || ||||| ||||||||||| ||||||||  |||| |||||  |||| ||||| ||| ||||||||||||| || || ||||||||  |   ||      ||    |||  | |||||     ||||  ||   || | | || | | || ||    ||    || | | |  | |  |||| |    
TTGAGCTCAAAAAGCTTATCGAAGCAAATCCCTTATTCCGTGACAAGTTGCAGTTTCCTCACCTCAAAAATTCACGGTTACGGACTCTTATTAACCAAAGgtacctcaattttttcttctctacatgct-atttcattgaatttaagtagatttagtttggactcacctt----taaaataaattagtggtgttttatcttggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322661|gb|GR838075.1|GR838075
EST:     CAATTTCCCA-CCTTAAAA-CTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTT
EST: gi|9204484|gb|BE330708.1|BE330708
EST:     CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
EST: gi|5605887|gb|AI899985.1|AI899985
EST:     CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAG                         CCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT
genomic: CAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGgtaatttttc ... taaattacagCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACAT