Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttcccgtttaaatgcttagtttttttacttgtgactattattatgtactgtactgtttaataatatttttaccctcgtag

Basic information

species Glycine max
transcript GLYMA08G22430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g06040.t01 (Vitis vinifera), 5'ss of exon 6
TAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttcccgtttaaatgcttagtttttttacttgtgactattattatgtactgtactgtttaataatatttttaccctcgtag
  ||||||| |||||||| ||||| ||||| ||||| ||||| || || ||||| |||||| ||||||| ||||||||||||  || |  | | |||   |   ||| ||  || | | |    | || || ||  ||     |   |  | |  ||   ||||
CCACTGGCCCACATTTCCACAAATATTCATAAAGGGGGAGTTCATAGGGGGATCTGATATTATTCTCAACATGCACCAGgttaatttctatatcaatatctg--tttcttgttt-tcaatgcagtaatatattgctctaac--actgtggtctgtcctgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845845|gb|BF071195.1|BF071195
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATGACTTCCAAGCAG
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAG
EST: gi|19936158|gb|BQ080747.1|BQ080747
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|41146075|gb|CK606286.1|CK606286
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|7042125|gb|AW472019.1|AW472019
EST:     TCAAGGGAGAGNTTATTGGTGGATCAGATATTGATCTCAATATGCACCAC                         ACTGGTGAATTGAATGGAAA-GCTTGAAGATATTACT
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAA-GGAAAAGCTTAAAGATATTACT
EST: gi|6724615|gb|AW309070.1|AW309070
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|13790877|gb|BG653468.1|BG653468
EST:     TCAAGGGAGAGTTTATTGGTGGGTCAGATATTGGTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGGAAAGCTTAAAGATATTAC
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTAC
EST: gi|207812142|gb|GD784385.1|GD784385
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|14992101|gb|BI317774.1|BI317774
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAG
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAG
EST: gi|15000045|gb|BI320859.1|BI320859
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|192326383|gb|FK015900.1|FK015900
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|151403203|gb|EV273013.1|EV273013
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|11117921|gb|BF219514.1|BF219514
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|58023967|gb|CX710708.1|CX710708
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|58017876|gb|CX704618.1|CX704618
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|192325587|gb|FK019443.1|FK019443
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|58024154|gb|CX710895.1|CX710895
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|15337806|gb|BI498462.1|BI498462
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|18711946|gb|BM522621.1|BM522621
EST:     GGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: GGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|151412930|gb|EV282742.1|EV282742
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCGAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|10255366|gb|BE823132.1|BE823132
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
EST: gi|58018211|gb|CX704953.1|CX704953
EST:     TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAG                         ACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA
genomic: TCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttccc ... accctcgtagACTGGTGAATTGAAGGAAAAGCTTAAAGATATTACTTCCAAGCAGTGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACTGGCCAACATTTCCTCAAATTTTCATCAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTCAATATGCACCAGgttggttcccgtttaaatgcttagtttttttacttgtgactattattatgtactgtactgtttaataatatttttaccctcgtag

- - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - GGTGGA