1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgacttttagaatagcttctactgttacagtgtttttgtggggagagaatcaatgaatcattgtttagtatgtcttgttctgatactt...
species | Glycine max |
transcript | GLYMA08G22410.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|192302311|gb|FG996649.1|FG996649
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|298175877|gb|HO015282.1|HO015282
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|192330664|gb|FK021969.1|FK021969
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|298163725|gb|HO012458.1|HO012458
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGAATCACCCGATGGGCATGGCGATGATGATEST: gi|192297284|gb|FG992393.1|FG992393
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|17518872|gb|BM187914.1|BM187914
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGEST: gi|192325877|gb|FK016554.1|FK016554
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCG
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|193648660|gb|FK600627.1|FK600627
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCATAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGAEST: gi|31462980|gb|CD405008.1|CD405008
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGA
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|298179041|gb|HO024776.1|HO024776
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|15813798|gb|BI786073.1|BI786073
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|16348392|gb|BI973987.1|BI973987
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|193708684|gb|FK648534.1|FK648534
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|209715584|gb|BW674321.1|BW674321
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGTGATGATGATEST: gi|192330663|gb|FK021968.1|FK021968
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|298198446|gb|HO039985.1|HO039985
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|193634000|gb|FK581108.1|FK581108
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|38192769|gb|CF921975.1|CF921975
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|192297285|gb|FG992394.1|FG992394
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|192310382|gb|FK002262.1|FK002262
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|208172653|gb|GD972882.1|GD972882
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGCGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|193411396|gb|FK377187.1|FK377187
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: CCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|192302312|gb|FG996650.1|FG996650
genomic: CCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|207802763|gb|GD773976.1|GD773976
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAATGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGAEST: gi|193366243|gb|FK330230.1|FK330230
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGA
EST: CCACGAATGTCCAGTGTGCGCACAGTTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAEST: gi|209715583|gb|BW674320.1|BW674320
genomic: CCACGAATGTCCAGTGTGCGCACAG-TATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGA
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGTGATGATGATEST: gi|192324441|gb|FK015792.1|FK015792
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGATEST: gi|298185232|gb|HO030445.1|HO030445
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGTAGGACCTGGTGGATCACCCGATGGGCATGGCGATGATGAT
EST: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT CTTGAAGTGGT
genomic: TGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcat ... acaaaaacagCTTGAAGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgacttttagaatagcttctactgttacagtgtttttgtggggagagaatcaatgaatcattgtttagtatgtcttgttctgatactt
- - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaga