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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTTTCAATGTTATTCCAGATTATGTCACAATTGGTGGCACTTTCCGAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaaggagaaaaatagattcattttacatgcatgaactgaaatctgaaatgaatgatctagactcttataatatacatcatcacctctcacttac...

Basic information

species Glycine max
transcript GLYMA08G21080.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193664894|gb|FK610868.1|FK610868
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
EST: gi|207745706|gb|GD715038.1|GD715038
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
EST: gi|193709891|gb|FK642141.1|FK642141
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
EST: gi|58014895|gb|CX701637.1|CX701637
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
EST: gi|192294315|gb|FG987244.1|FG987244
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
EST: gi|57574840|gb|CX547815.1|CX547815
EST:     GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAG                         GTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC
genomic: GAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaag ... atttatgcagGTTATCATTGGTCAAGCTGCTGTGCTAAGGTGCAATGCAAGTGTCAACTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGCTTTCAATGTTATTCCAGATTATGTCACAATTGGTGGCACTTTCCGAGCTTTTTCTAGAGAAACATTGGAGCACCTTAAACAACGCATTGAGCAGgtttgtcaaggagaaaaatagattcattttacatgcatgaactgaaatctgaaatgaatgatctagactcttataatatacatcatcacctctcacttac

- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac