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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTTGCAAATGGAGTATCTTCAGATGGACCATATAATTATTTAAACAACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTGgtagttgtgttcaacccttccaatttatttattttttcccaatatttgtttctcggggataaacattatagaaggttttaatggaggggaagggaggaag...

Basic information

species Glycine max
transcript GLYMA08G20830.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193511886|gb|FK469995.1|FK469995
EST:     ACGATTTCTCATTTCCACCAGACGGTGTACCTTCACTAAGATTACCATTG                         GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCC
genomic: ACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTGgtagttgtgt ... aaatatgtagGTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCC
EST: gi|7690859|gb|AW758996.1|AW758996
EST:     ACGATGTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTG                         GTAGTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATAT
genomic: ACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTGgtagttgtgt ... aaatatgtagGTA--A-CCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATAT
EST: gi|7796415|gb|AW781812.1|AW781812
EST:     ACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTG                         GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCC
genomic: ACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTGgtagttgtgt ... aaatatgtagGTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCC