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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGTGTCAGGGTTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAAAAGTTGATAAAATCTTGgtattgtctcatattcaaattctatatttctatttgttctctacccattagtaaggaaactgtgtttgcaattttag

Basic information

species Glycine max
transcript GLYMA08G20780.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 3
GATTGTGTCAGGGTTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAAAAGTTGATAAAATCTTGgtattgtctcata-ttcaaattct-----atatttct------atttgttctctacccatta--gtaaggaaact------gtgtttgcaattttag-
|||||  ||| |  |||| ||      || || ||||||||||||||||||||||| |||||||| ||   ||||||||||||  |||||      |||| |||||| | |     || |||||      ||   |    |||  ||||  | ||  ||| |       | |||||| || ||  
GATTGCATCATGTCTGCTCTAGCTCAAAAGACTGTTATTCTTGTGACTCATCAAGTGGAATTTCTATCTGCAGTTGATAAAATTCTGgtaacaaagcatagttcaaaatttgatgaatctttcttcatgcatacatgtgttactgattatggcaacaaaaattattggatttttgcacttctaag

upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 15
GATTGTGTCAGGGTTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAAAAGTTGATAAAATCTTGgtattgtctcatattc---aaattctatatttctatttgt-tctctacccattagtaaggaaactgtgt-----ttgcaattttag
|| || |||| || |||| |       ||||| || ||||| |||||||||||||| || ||||||||  |||||||||||||  ||||| |    | || ||   ||    || || | |  |||| | | |    || || |   ||| | | |      |||| || |||
GAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTGgtaataaggcttactctgaaagcaataaatatttccttgtatatatgattatgagaacaaaaattatctgccttctgcatttctag