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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttttttcctcttttttagttttcacccttgttccatcttaaatactgactaatttcagaatttttaagtctgtggctgcttgtatttcttattttaatgcttttccattttaatcttctttctttatgcaactaatttccctccccctctgcgatgcttgtaaag

Basic information

species Glycine max
transcript GLYMA08G20610.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20610.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G13870.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttttttcctcttttttagttttcacccttgttccatcttaaatactgactaatttcagaatttttaagtctgtggctgcttgtatttcttattttaatgcttttccattttaatcttctttctttatgcaactaatttccctccccctctgcgatgcttgtaaag
||||| |||||||| || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||| |||  | ||   |  ||| |  | ||     ||  |  ||   |      ||||  |||     | ||||    | |  || || | |||| | ||                                                                         
GATGATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGCAGTCTCAGACATAGTTCTTATAAACATgtaagtggtgttctttactttgttttctttgatattaatagataacag-----gacttcttttgccgtctttat-cttatatcttctcggatttgtaatgcag---------------------------------------------------------------------

upper sequence: GLYMA08G20610.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 5
GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttttttcctcttttttagttttcacccttgttccatcttaaatactgactaatttcagaat-ttttaagtctgtggctgcttgtatttcttattttaatgct-tttccattttaatcttctttctttatgcaactaatttccctccccctctgcgatgcttgtaaag
||||| ||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||| |||||| || |          |  |  | | | | | |  |  | ||  ||  | | || |  || |||| ||   ||  || |||  ||   ||||   | |  | | |  |    ||| || |||                                            
GATGATACTGCATTTGAGAAGCAGAGTGCCCTTTTTGCTCTTGCTGTTTCAGACATAGTGCTAATCAACATgtaagttttattacaaaaca--aggcatataacttggattctac--agattatgtttcagttaaacatgttttgag---gtatct-ctttaatggtttatgcgagtaatatcttgaagcgaattttgtttag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726345|gb|BW680244.1|BW680244
EST:     CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACAT                         GTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACT
genomic: CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttt ... gcttgtaaagGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACT