1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaactctattttgtcttagtttctgttagtaatgtgtgctttctattggattttacaacgcaaatgcacaaaatctaccatatagatcaaacgt...
species | Glycine max |
transcript | GLYMA08G20370.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCEST: gi|27425282|gb|CA936802.1|CA936802
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGC
EST: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|151407511|gb|EV277326.1|EV277326
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|19937410|gb|BQ081279.1|BQ081279
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|192330008|gb|FK020824.1|FK020824
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: ATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|192330007|gb|FK020823.1|FK020823
genomic: ATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|15814159|gb|BI786434.1|BI786434
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAEST: gi|151400839|gb|EV270653.1|EV270653
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGA
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|15814245|gb|BI786520.1|BI786520
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|151410805|gb|EV280620.1|EV280620
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTTGACAAGAACCCTEST: gi|31470945|gb|CD412973.1|CD412973
genomic: AAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTT-GTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTT-GACAAGAACCCT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|8404161|gb|BE059795.1|BE059795
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|31305637|gb|CD390840.1|CD390840
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|22523391|gb|BU082202.1|BU082202
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|31560978|gb|CD486816.1|CD486816
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|192294008|gb|FG987177.1|FG987177
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|7029699|gb|AW459482.1|AW459482
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|27425296|gb|CA936816.1|CA936816
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTEST: gi|13252293|gb|BG363196.1|BG363196
genomic: GACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTT
EST: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACACTAACTCAAGCTTGGGCTACAG
genomic: AAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaac ... gatattgcagACACTAACTCAAGCTTGGGCTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGgtaatgcaactctattttgtcttagtttctgttagtaatgtgtgctttctattggattttacaacgcaaatgcacaaaatctaccatatagatcaaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG