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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaatactttcggatcctttttatacatagtgtttaaatgtagttttgcccttttgctgtgtgataatagagagttatttgactgatttagacatag...

Basic information

species Glycine max
transcript GLYMA08G18810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 5
TGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaatactttcggatcctttttatacatagtgtttaaatgtagttttgcccttttgctgtgtgataatagagagttatttgactgatttagacatag-------
 ||| ||| |||||| || ||  || | ||||| || || || || ||  | |||||||||||||| |||||||| |||||||| ||||| ||||| ||||||  || ||     | ||| ||||   ||   ||  ||   |||| ||     ||| |       | |||   |  ||     | |   || |   |         
GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgta-aaaaacaagaagttccatttttctcagcctgcata---gtagcttacagttttag--aaacaaaaatgatggtttccactatttcctttggtgttttattcag

upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
TGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaat-----actttcggatcctttt---tatacatagtgtttaaatgtagttttgcccttttgctgtgtgataatagagag--ttatttgactgatttagacatag---------------------------------------------------------------
 ||  |||| ||||| || ||  |||| || |||||||| || |||||  | |||||||| ||||| || ||||| |||||||||||||||||||| ||||||  | |     |||||       ||||   |||    | |  |  | | || ||||      |   ||    ||  ||| |||  ||   |   || | |   | |                                                                 
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588627|gb|AW704419.1|AW704419
EST:     TCCTTCAAAAACTGGCATTCTTCCGGTGAATCCTACATTCCTCCCTTAG-                         TCGGATGATGAGCGGGAAATGTGTGCCCCGACTATC
genomic: TCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCT-AGGgtatgaatac ... taacatgcagTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATC
EST: gi|19934604|gb|BQ079634.1|BQ079634
EST:     TTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGG                         TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATT
genomic: TTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaatac ... taacatgcagTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATT
EST: gi|9204058|gb|BE330282.1|BE330282
EST:     CCTACATTCCTCCCTAGG                         TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATT
genomic: CCTACATTCCTCCCTAGGgtatgaatac ... taacatgcagTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATT