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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggtatgttatgcag

Basic information

species Glycine max
transcript GLYMA08G18760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatag-ctttatatggt--atgtta-tgcag--------------
||| |||||||||||||| |||||||| || || || ||||||||||| ||||| || ||||||||||| |||||| | || ||||||||||| || |||||  ||    |    |  |||  ||    | |  | | |  |  | || |  || | | || | | || |||    |  ||| || ||  |              
TCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGgtttgatgcattctagaattcggtgtacttaa--actgtgcattaaccag-atactcatttgtgggctctatgcatttgatgctaatgttgattctatcacccag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtga----gacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggta--tgttatgcag
||| |||||||| ||||| ||||| || || ||||||||||| || || || || || |||||||| ||||||||| |||  || ||||||||||| |||||        | |  |      | |||   |   |||  |  |||||  ||   |  | || ||||| ||  ||| |      | || | |||
TCTCTATGTTGTGGAGGGAATGCAGTTTGAACGTGGTTATATCTCCCCGTATTTTGTAACTGACAGCGAGAAAATGTCTGCAGAATATGAGAACTGCAAGgtagcttcagcctgagcacacatacccc-tgctgtatgctgctttaa--tctgtttcagtttcttattgcactatgtttccactatttttcag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgt-tttccctgcgaattattattttttaacatcctgtg-tatt--tacttatagctt-tatatggt-atgtta--tgcag------------
 || |||  ||||||||| ||||| || |||||||| ||||||||||| ||||| || ||||||||||| |||||| | || |||||||||||||| |||||  ||   |   ||   |     | | ||  ||| | |  |   |||  ||  ||    |  ||||  ||| | || | | | | |   |  |             
CCTCTATTCTGTTGAGGGAATGCAGTTTGACCGTGGCTATATTTCTCCCTACTTTGTGACTGACAGTGAAAAAATGACAGTCGAGTATGAGAACTGCAAGgtttgatgctccccttcatcattgtactaaaaattctgtagtgctatctagtaatagcagtttttatgacttctgtacgcttacggtgattttaattctattaccag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 5
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtga----gacatttg---tctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggtatgttatgcag--------------------------------------------------------------------------------------
||| |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||| |||  ||||| |||||||| ||||| |     | || ||   | |   |||  |     ||  | ||| ||    |||||| |    |   | |      | ||   | ||  |  |                                                                                      
TCTCTATGTTGTGGAGGGAATGCAATTTGACCGTGGTTACATCTCTCCGTACTTTGTAACAGACAGTGAGAAAATGACTGCAGAGTACGAGAACTGCAAGgtaactgtaaaatatgagatatcaattcttttttttttgctgtttattgctttcctgtttcaaaagaaaaaaaaaactctgacctattggggggtgggggtaagacagttcctaggcaaacagcagttgctttcctgtttcagactattaatgctattgtctttcatcttcattgttcag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagc-tttatatg-gtatgttatgcag---------------------------
 || || || || || || |||||||| |||||||||||||| ||||| ||||| || || ||||| ||||||||| | || ||||  || || || ||||| |||  ||| |    | |   |   |  |    ||| ||  ||  || | ||   ||| |     |||||||  |  | | |    |                           
CCTCTACGTCGTAGAAGGAATGCAATTTGACCGTGGTTATATCTCTCCTTACTTTGTGACAGACAGCGAGAAAATGTCCGTCGAGTTCGACAATTGCAAGgt-agatgtttcttgaatctgagtagaagatgaattttgttggcagactatttagccactaaagatatttatatatgagtataacaacgatctttaatgttttggtatgattgcag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttactta-tagctttatatggtatgttatgcag
 || || |||||||| || |||||||| || ||||||||||| ||||| ||||| || || |||||||||||||||  ||  || ||||||||||| |||||   |   |||| | |            | ||   |  | || | ||   ||||||  | | ||  | | | |  |   || || ||
CCTTTACGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTGTGCAGAATATGAGAACTGCAAGgtattattattgtttatacagttaaatcttaatagctgataaaaaaccgcagtattttttgactatatgtctcttcttgcttttgtag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggtatgttatgcag
 || |||||||| || || |||||||| |||||||||||||| || |||||||| || || ||||||||||||||| ||||||||||||| || || ||||| |    | | | |  |   |   | || |  |||| |    ||    |  ||   | ||    || |  |               
CCTTTATGTTGTGGAAGGAATGCAATTTGACCGTGGTTATATCTCCCCATACTTTGTGACAGACAGTGAGAAAATGTCTGTTGAGTATGACAATTGCAAGgtaatttttctttattctgagctaccaaaatgatattgtgatgcaaatagcctaacaagtttctactgtgcag--------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 6
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttata--tggtatgttatgcag------
 |||||||||||||| || |||||||| |||||||||||||| || || ||||| || || || |||||||||||||| ||||| |  |||||||| |||||  |   ||    | |  |    | ||  || |||  |    |  |  || |  ||  || | ||||| ||  ||  |  || ||         
CCTGTATGTTGTTGAAGGAATGCAATTTGACCGTGGTTATATCTCACCTTACTTTGTCACCGATAGTGAGAAAATGGCAGTTGAATTCGAGAACTGCAAGgtttgcatttctcttataatttaggagagctaatatggtacttctgcaagt-tggttctttctggctttctaactgacaaattttgttcatgtag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 5'ss of exon 5
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggtatgttatgcag-----------------
  ||||||| ||||||||||||||||||||| | || || |||||||| ||||| || |||||    ||||| |||| ||||||||| || ||||| | |||   |  ||||| | |||  ||  | | || || ||||  || ||  | | || | || |    |||   |     | | | | ||                 
CTTGTATGTGGTTGAGGGGATGCAATTCGACAGAGGATACATTTCTCCCTACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgt---atgtttgtatctttaaccctctagttttttttttcgaaaatagtatttaataacgtgatacttc-cacctcttttcacgtagagctgcctaagagaact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530535|gb|EH258668.1|EH258668
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193729260|gb|FK663436.1|FK663436
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGA
EST: gi|207793915|gb|GD765275.1|GD765275
EST:     TGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: TGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|15589931|gb|BI674547.1|BI674547
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|10847373|gb|BF071535.1|BF071535
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193656508|gb|FK604996.1|FK604996
EST:     GTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193325058|gb|FK290594.1|FK290594
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAA-GATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|20075657|gb|BQ094440.1|BQ094440
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193305864|gb|FK272803.1|FK272803
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193394438|gb|FK360711.1|FK360711
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|26268602|gb|CA819665.1|CA819665
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|208265090|gb|GE065418.1|GE065418
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACA
EST: gi|15813847|gb|BI786122.1|BI786122
EST:     GAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193553289|gb|FK509968.1|FK509968
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193677530|gb|FK616132.1|FK616132
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         CTGCTGTTAGTTGAACAAAAAGNTAACCAATGCACGGGATCTTAT
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGA-CAAAAAGATAACCAATGCACGGGATCTTAT
EST: gi|208098527|gb|GD894374.1|GD894374
EST:     AGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: AGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193675725|gb|FK615749.1|FK615749
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         CTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTAT
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTAT
EST: gi|193602042|gb|FK558823.1|FK558823
EST:     GTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|207760997|gb|GD735006.1|GD735006
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193414992|gb|FK377026.1|FK377026
EST:     GTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|16279198|gb|BI943310.1|BI943310
EST:     GAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|120530550|gb|EH258683.1|EH258683
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|207745269|gb|GD714517.1|GD714517
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|16278942|gb|BI943174.1|BI943174
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|193686313|gb|FK626000.1|FK626000
EST:     GTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: GTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
EST: gi|17401201|gb|BM177983.1|BM177983
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAA
EST: gi|15201304|gb|BI424801.1|BI424801
EST:     CTTCGTTACTGACAGTGAGAAAATGGCTGGTGAGTATGAGAACTGGAAAG                         T-GCTGTTAGTTGACAAAAA
genomic: CTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAA-Ggtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAA
EST: gi|192323269|gb|FK015275.1|FK015275
EST:     ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA
genomic: ACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCACGGGATCTTATCAACATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGTATGTTGTTGAGGGGATGCAATTCGACCGTGGTTATATTTCTCCATACTTCGTTACTGACAGTGAGAAAATGGCTGTTGAGTATGAGAACTGTAAGgtgagacatttgtctgttttccctgcgaattattattttttaacatcctgtgtatttacttatagctttatatggtatgttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT