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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGGCATGCCAACATGAAgtgtccaacctcattttataattgttatactttacttggtgatggtttcaggaattgttgacaaattttatttatttgaaacag

Basic information

species Glycine max
transcript GLYMA08G18580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G17220.1 (Arabidopsis thaliana), 5'ss of exon 4
---------------CGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGGCATGCCAACATGAAgtgtccaacctcattttataattgttatactttacttggtgatggtttcaggaattgttgacaaattttatttatttgaaacag
                |||||||| ||||||||||||||||||||||| |||||||| || || || || |  ||||| ||| | || || ||||| |||| ||      ||    | |  | | |   | |||    |||   |      |  |  |  ||||| |                                
CATTGTGGTTGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAAGCAATAGCTCACGCAAAGGCTGCTGCTGTACCAATAGTTATAGCTATAAATAAGgtattttgttattct-tctttaccttgggtatatgtaagtttctcccagtcttat--tcatttcatgttccag--------------------------

upper sequence: GLYMA08G18580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0027g00130.t01 (Vitis vinifera), 5'ss of exon 4
---------------CGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGGCATGCCAACATGAAgtgtccaacctcattttataattgttatactttacttggtgatggtttcaggaattgttgacaaattttatttatttgaaacag
                |||||||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||| ||  | || || ||||| |||| |     | | | | |    |             | |||   |  || ||   |    |||| |    ||  |  || |||  |              
TATTGTTGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAGGCCATAGCTCATGCTAAAGCAGCTGGGGTACCAATTGTAATAGCTATAAATAAGgtaactttataggcacttagaagtgcttacaccctactgtctcaacttcctgtttctcagtttta----ttccttccatattccag-------------