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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagccaaaattctcatacctgatttagatatggtgacacttctttctacaacttgatagtagttgcccttctgatgtgtgaattgcttgctgcct...

Basic information

species Glycine max
transcript GLYMA08G18560.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0006g02010.t01 (Vitis vinifera), 5'ss of exon 5
CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagccaaaattctcatacctgatttagatatggtgacacttctttctacaacttgatagtagttgcccttctgatgtgtgaattgcttgctgcct-
||||| | ||||||||| || |||||||||||||| ||||| |||||| | |||||| |     | |||  || | |||   | |  | ||       || ||     ||  |  |      ||        |  || | | | |       || 
CAAGGTGTAGAGAAGCCCAAAGGACCACTTGAGGCCCTTCGACCTAAACTGCAGgtactggtttagaatgttc-tccctttctaatttctgcccttgattgttgtgttaatgttttcactactggttgataaacatgggcactacaaaggatctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827757|gb|BE211487.1|BE211487
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|31305685|gb|CD390888.1|CD390888
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|254324562|gb|GR833987.1|GR833987
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|192313316|gb|FK005088.1|FK005088
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|193451500|gb|FK420608.1|FK420608
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|19348889|gb|BM893421.1|BM893421
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|207729552|gb|GD707336.1|GD707336
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCA-G-
EST: gi|4313320|gb|AI460439.1|AI460439
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGG
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGG
EST: gi|6069887|gb|AW099483.1|AW099483
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|6072271|gb|AW101658.1|AW101658
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|10233289|gb|BE802177.1|BE802177
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|27426337|gb|CA937857.1|CA937857
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|192313317|gb|FK005089.1|FK005089
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|11412304|gb|BF424315.1|BF424315
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|10233243|gb|BE802131.1|BE802131
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|15202918|gb|BI425686.1|BI425686
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAA
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     GCGGAGAGAAGCCTAATGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|7639980|gb|AW734290.1|AW734290
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|4303380|gb|AI443468.1|AI443468
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|254324561|gb|GR833986.1|GR833986
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|31309242|gb|CD394445.1|CD394445
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|193491775|gb|FK454325.1|FK454325
EST:     TTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: TTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|6914456|gb|AW395986.1|AW395986
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|58014741|gb|CX701483.1|CX701483
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGTTTTTCGGCTTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|31472363|gb|CD414391.1|CD414391
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
EST: gi|6069892|gb|AW099486.1|AW099486
EST:     GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG                         CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA
genomic: GCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagcc ... tgcttttcagCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGgtatttagccaaaattctcatacctgatttagatatggtgacacttctttctacaacttgatagtagttgcccttctgatgtgtgaattgcttgctgcct

- - - - - AGAAGC