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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgcccccttactccatttttcaatttgtgtatcatatatatttcatatcgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcag

Basic information

species Glycine max
transcript GLYMA08G18410.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 5'ss of exon 5
GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgcc--cccttactccatttttcaatttgtgtatcatatat--atttcatatcgtgacactatttatatacactaaaacatgtatggtt-tccctttggtcattgcag--------------------------
|| || |||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||     | |      |  ||  |  ||| |||    |||  ||| | |     ||     |||||  |      |   ||| ||||  |     |       |  |                          
GAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATgtaagctatttcctcaattgtcgtttgagctgtttattgcttattaattacctgcatggaggtcgtttatggatgtgttattttgtttggtggtgtgcctaactgaagttgaatccgtgggtgatgcatatttacag

upper sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G872417_T01 (Zea mays), 5'ss of exon 5
GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgcccccttactccatttttcaatttgtgtatcatatatatttcatatcgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcag-
|| || || |||||||||||||||||| ||||||| |||||||||||||| ||||| |     | | ||| | |     ||||    |  | | |  ||| |   |  |  | ||||        | ||  ||| |    ||  |     | | |  || 
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttca-tccgtgtcc---tttggagtttttgt-tgcttccttctg-aaggccattttctgttgttcaataatgcactcgttttcagaaat-actaaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820147|gb|BE555657.1|BE555657
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|6071299|gb|AW100686.1|AW100686
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|209715542|gb|BW684762.1|BW684762
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|151406500|gb|EV276315.1|EV276315
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|209726604|gb|BW666522.1|BW666522
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|209715541|gb|BW684761.1|BW684761
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|151395707|gb|EV265584.1|EV265584
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|298169812|gb|HO018436.1|HO018436
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|209721770|gb|BW666390.1|BW666390
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|20813375|gb|BQ297853.1|BQ297853
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|193538078|gb|FK494609.1|FK494609
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTA
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTA
EST: gi|209726603|gb|BW666521.1|BW666521
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
EST: gi|192297078|gb|FG992014.1|FG992014
EST:     GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT                         AAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC
genomic: GGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgccccc ... gtcattgcagAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTC