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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttctatatacatatttaaatcattttaagttaaatatattttattacatcattaattcattgtatattgatagtggttacgcataatggcaatt...

Basic information

species Glycine max
transcript GLYMA08G17810.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688055|gb|BG154391.1|BG154391
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTGTCGAAGTTTTGGTTTCG-AAAAGCAGGAAACAA
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGA-GTTTTGGTT-CGGAAAAGCAGGAAACAA
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|19268728|gb|BM884984.1|BM884984
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|207767049|gb|GD737011.1|GD737011
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|208333367|gb|GE126132.1|GE126132
EST:     TCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: TCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTTGATTT-CGAGTTTTGGTTCGGAAAAGCAGGAAACAAG
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCT-GATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAG
EST: gi|13311848|gb|BG405499.1|BG405499
EST:     G-CCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|298195959|gb|HO044350.1|HO044350
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTTGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|207730604|gb|GD707491.1|GD707491
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|15000807|gb|BI321621.1|BI321621
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|207710725|gb|GD691717.1|GD691717
EST:     AACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: AACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|208056326|gb|GD853305.1|GD853305
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAA
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAA
EST: gi|208330695|gb|GE132640.1|GE132640
EST:     TAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: TAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... tgttgttcagTGGCATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAACAAGC