1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAGGCATTTGGAAAAAGGAAGGGTTGTCATTTTTGCTGCTGGAACTGGAAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaatttttattgatgtgatctagaacaaggatagctctaatcatttggttcctatagtttcacgattcgtatcttttagtccctatagtttga...
species | Glycine max |
transcript | GLYMA08G15610.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGEST: gi|214008530|gb|DB987435.1|DB987435
genomic: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaa ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
EST: AAT-CGTTATATTACCACAGACACTGCTGCAGCACACAGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGEST: gi|16277118|gb|BI942213.1|BI942213
genomic: AATCCATTCT-TTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaa ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
EST: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACCTCAA-GCAACAAACGTTGATGGAGTTNTTGATEST: gi|192301628|gb|FG994364.1|FG994364
genomic: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaa ... atttattcagTTAATGCCGAGGTTGTAC-TCAAAGCAACAAACGTTGATGGAGTTTTTGAT
EST: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGEST: gi|5509675|gb|AI856233.1|AI856233
genomic: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaa ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
EST: -AATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTNTGATG
genomic: AAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaa ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGGCATTTGGAAAAAGGAAGGGTTGTCATTTTTGCTGCTGGAACTGGAAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaaatttttattgatgtgatctagaacaaggatagctctaatcatttggttcctatagtttcacgattcgtatcttttagtccctatagtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG