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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag

Basic information

species Glycine max
transcript GLYMA08G15340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G013750_T03 (Zea mays), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgta---tgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag
|| |||||||| ||  ||||||| ||||| ||||||||||| ||||||||||| || |||   ||  |   | || ||||| |    ||  |    ||  |     || |||  |      ||||  |  || ||  |||                           
GTCGAAACATTTGGCTCCATGGCAAAGACGGAGaaaattgctttcattcttgagcaggtaacgtgccaacctattatgttaatactttg-tatttttacgaaaaggcttattcat------gcaaaac--ttactattattg-------------------------

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G013750_T04 (Zea mays), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgaca-gcaatagcaggtcactaatttcttgtgttgcaatt-cagttgctgatatcagaatcttccatgtcaaattgtatag
|| |||||||| ||  ||||||| ||||| ||||||||||| ||||||||||| || |||  |  |       | |||   | ||     | | |   | |  |    ||  |  ||    | || |  ||  || | ||| |                       
GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAGgta--acgtgccaacctattatgttaatactttgtatttttacgaaaaggcttattcatgcaaaacttactattattgttgtcacag----------------------

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag
||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||| |        ||||||   |  | ||  |  ||||    |    |  ||||||   |||  ||           ||||| | | ||    |||||| | || ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAgtaagga-----cttgtgtagttacgttgcaattaataatttgctggtgttttctttcattgtgata--------actatcaaactattgtg-gtcaaactttaaag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag
||||| ||||| ||||| ||||| || |||||||||||||| |||||||||||||||||| ||    ||| |||  |  | | ||       |      ||   |  |   ||||  |    |  |  |  ||||   |     |    ||| || || |  ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaaga---ctttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag----------------------------------------------------------
||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||| | | ||| ||  | | | |||  |   |   |   |    || | |||  ||   |     || | || ||  || ||   |  | | |  |  ||| |||                                                            
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttc-tttcattgttcttttaattacttcta-ccatttattcttttattgttcttttaattacttgtaccat--ttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S58_256V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtc--actaatttcttgtgttgcaa--ttcagtt-gctgatatcagaatcttc---catgtcaaattg-tatag---
||||| || |||||||| ||||| ||||| ||||||||||| |||||||| || || ||| |  |  || |||  ||   |  |||      ||   || ||  | | |       |  || |   ||||||| | |  | || ||||| |    ||| | | | || | | |   
GTGGAGACCTTCGGTGCTATGGCAAAGACAGAGAAAATTGCTTTCATTCTAGAGCAGgtaaggaaatttcttggctttacgctatgctgtatatgctagctcgtatttaggaacgatactgaagctttcagtttggtactttccgaatcattactcatattagaatgatgttgcag

upper sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttt-----tgtgttactgtgatgacagcaa--tagca----ggtcactaatttcttgtgttgcaattcagttgctgata--tcagaatcttccatgtcaaattgtatag-------------------------------
|||||||| || ||||||||||| || |||||||| ||||| |||||||||||||||||| |   | ||||     ||   | ||||  |  |||| |  | ||     | | |   | |  |||| ||| | |||    ||||  |  ||  | |  |    || |  |||| |||                               
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggatttttttatatttgcaatcctgttttaccagctactttgcgtttggtttaaatagtatttgtattgaagttcttgagctggcacttcgaagttcttaccgttattttgt-tagagccagtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990252|gb|BI315925.1|BI315925
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|308097990|gb|HO761161.1|HO761161
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|308098358|gb|HO760099.1|HO760099
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|308098130|gb|HO761301.1|HO761301
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192296110|gb|FG989470.1|FG989470
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|6566939|gb|AW234570.1|AW234570
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|15286081|gb|BI469972.1|BI469972
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192334269|gb|FK024396.1|FK024396
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|19054166|gb|BM732833.1|BM732833
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|26057523|gb|CA800437.1|CA800437
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|18734293|gb|BM528099.1|BM528099
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|15284757|gb|BI468648.1|BI468648
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCC
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|12690044|gb|BG156380.1|BG156380
EST:     CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAGATACTCTCA
genomic: CATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193447151|gb|FK412338.1|FK412338
EST:     CATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA                         GTTCGTTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTC
genomic: CATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagata ... aattgtatagGTTCG-TTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTC