1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCTCTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtactgtatctaatttgccgtgtttatgtttttctgttatcttattatatttttcatcaaatgatttttttatttaattattttttggcag
species | Glycine max |
transcript | GLYMA08G15220.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGEST: gi|298180283|gb|HO021894.1|HO021894
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtactgtatc ... tttttggcagGCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTAATCCTAAGAACAC GCCTTGGTCTTACCATAATGCA
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtactgtatc ... tttttggcagGCCTTGGTCCTACCATAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCTCTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtactgtatctaatttgccgtgtttatgtttttctgttatcttattatatttttcatcaaatgatttttttatttaattattttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC