Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaaagttctctgcttaaattctcattgtgtcatttccagttaatattgtttgccaaacttaaaatggtttgttatttctttttcctctcag

Basic information

species Glycine max
transcript GLYMA08G14050.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14050.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaaagttctctgcttaaattctcattgtgtc--atttccagttaatattgtttgccaaacttaaa-atggtttgttatttctttttcctctcag--------------------
| |||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||   |||||||||||| || ||||  | |||||| |||||||||  |  ||||        ||| |  |||      | || || ||  | | ||  |    | | |   ||||| |||| | |  ||||    |||                     
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaa-ggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag

upper sequence: GLYMA08G14050.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaaagttctctgcttaaattctcattgtgtc--atttccagttaatattgtttgccaaacttaaa-atggtttgttatttctttttcctctcag--------------------
| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||   |||||||||||| || ||||  | |||||| |||||||||  |  ||||        ||| |  |||      | || || ||  | | ||  |    | | |   ||||| |||| | |  ||||    |||                     
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaa-ggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag