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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaattgttttacttctatctactgataaaactttgatagttataatattctttcagttttgatatttttaacgtttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattctctttctgcag

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaattgttttacttctatctactgataaaactttgatagttataatattctttcagttttgatatttttaacgtttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattctctttctgcag
 |||||||||||||||||||| || ||||| || || ||||| ||||||||||||||  |  | |  |  |  |  ||    ||      || | |||  | ||||  || |  |  |    |  | ||    ||||| || ||   |  ||| |  | ||           ||| |  | | || | |||  |   |   | || ||
AGCAATGGGGGATGTTTCTGATCGTATAGGCCGGCCAACAGACAATGGTCAGgtattgaa--tatcgtcgtcttgactgtgcat------ttcagagtgcttatatatttactttcct----tcatcaaaaaatatgcgttgtc--attaagggtttggtgggc--------atgtagcttacctctgatttgacaattgctttgtag

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaattgttttacttctatctactgataaaactttgatagttataatattctttcagttttgatatttttaacgtttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattctctttctgcag
||||||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||    || | ||    ||||    |  ||| |||||    | ||    |   ||||  |  ||     || ||||   ||| | ||   || |  || | | ||  || |    | |||     | | |  |  ||  || |||||
GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtatt-gagtt-cagtagtactgc--actgt---atttttcatagtggctagat----ttgattttccttcttcagttgtatatgtgctatattgtaacggttatgtggcatgt--ttgagctgacttc-----tcaatggacactgattttgcag

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaattgttttacttctatctactgataaaactttgatagttataatattctttcagttttgatatttttaacgtttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattctctttctgcag
 |||||||||||||||||||| || ||||| || || ||||| ||||||||||||||  |  | |  |  |  |  ||    ||      || | |||  | ||||  || |  |  |    |  | ||    ||||| || ||   |  ||| |  | ||    |                                          
AGCAATGGGGGATGTTTCTGATCGTATAGGCCGGCCAACAGACAATGGTCAGgtattgaa--tatcgtcgtcttgactgtgcat------ttcagagtgcttatatatttactttcct----tcatcaaaaaatatgcgttgtc--attaagggtttggtgggcat------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714348|gb|BW665598.1|BW665598
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|213615293|gb|DB963487.1|DB963487
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|213589389|gb|DB961722.1|DB961722
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|213590572|gb|DB968122.1|DB968122
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|207808214|gb|GD779039.1|GD779039
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|209717579|gb|BW679686.1|BW679686
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGAT
EST: gi|209723170|gb|BW675116.1|BW675116
EST:     CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAG                         ATTGGCATTATTGATCCTGAATGTAGGTTGATTGGACTCCACTT
genomic: CAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaat ... ctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTT