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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgtaatttcttggtaacatgttgatgccacattaaattactttcatgatcaacttttatatgaatattaagatttatcgtcactgcggtcatctgcttaca...

Basic information

species Glycine max
transcript GLYMA08G13560.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G037683_T01 (Zea mays), 5'ss of exon 4
CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgtaatttcttggtaacatgttgatgccacattaa-attactttcatgatcaacttttatatgaatattaagatttatcgtcactgcggtcat-ctgcttaca
|| ||||  |||||||  | ||||| || ||||| ||  | |||||  | |||||||||||||| |||||||| ||||| ||||||| | |||| |   ||   |  |   |   |   |  |  |  ||| | || | ||||   |   | | ||   ||  ||| |    || |  ||| ||  
CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGATTGGTCAGGCTTTGAAGTGGCAACAGCACCAAGgtattctctttgctgcacactattaaaaggatgctaccatgtatatg-ttaattgttatgaaatagtcatgag--attttcaatcttttcctattgcgtag-

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgtaatttcttggtaacatgttgatgccacattaaattactttca----tgatcaacttttatatgaatattaagatt-tatcgtcactgcggtcatctgctta-ca----------------------------------------------
|| | || || || ||||| || || ||||| || || || |||||||| || |||||||||||||||||||| || ||||||||| |||   |    |  ||| ||||| ||   | | | || |||    | |||   |||| | | | | ||  |  |  ||    | |      ||    | | ||                                              
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 5
CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgt-aatttcttggtaacatgttg-atgccacattaaatt--actttcatgatcaacttttatatgaatattaagatttatcgtcactgcggtcatctgcttaca
| || || || |||||| ||||||| || ||||| ||||| |||||| | |||||||||||| | ||||||||||| ||||||||| ||  | ||  |   |||||| ||    |  | |||   ||||   |  | ||  |   |   ||   | | || | |  |   |   || ||   |||   
CCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattttattgtaatgttgcattatgctgtgaatgtgacttgtttacttaaagtgctttcaaaatcttatatat-ttatttgttttgtaatacactt---

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S31_68V6.1 (Physcomitrella patens), 5'ss of exon 5
CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgtaatttcttggtaacatgttgatgccacattaaattactttcatgatcaacttttatatgaatattaagatttatcgtc--actgcggtca---tctgcttaca--
||||  | |  || || ||||| || || || ||  |  |||||||||| ||||||||||| ||||| ||||| || ||||||||||    |||| |  | | | | | | | |||   | | ||  ||| |  |          | | ||   | ||||   |  ||   |||||   | ||| | |   
CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgta----cttgatgtc-tctagcttcgatattt--tgaattctatgttggaaagcggagaaacttttctaacttattagctgacctaggtcagagtttgcgtcctta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207732274|gb|GD705269.1|GD705269
EST:     GGCTTTAAAGTGGCAGCAGCATCAAG                         GGTTACTTCCTCCAGGAACGCAGTTTGATTTGTTTCGTGGAACAGCTGCTA
genomic: GGCTTTAAAGTGGCAGCAGCATCAAGgtaatttctt ... gctttctcagGGTTACTTCCTCCAGGAACGCAGTTTGATTTGTTTCGTGGAACAGCTGCTA