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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGgttggttgttctcacttctcattagcatatatattcttgggaaacttttgccctttatcttttatttttaattgaagagtagtagattttgataattttctttctgaattgactttggtgctatgcctccag

Basic information

species Glycine max
transcript GLYMA08G13070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13070.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 7
TATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGgttggttgttctcacttctcattagcatatatattcttgggaaacttttgccctttatcttttatttttaattgaagagtagtagattttgataattttctttctgaattgactttggtgctatgcctccag
||||||| |||| |||||||   | |  || || ||  | ||||| |||||||| |||||| ||||||||||||||||| | ||||| || ||  | || ||  ||  ||    |||  |||     |||    | |      |||| |      |    |  || || | |  ||  ||  |   | || |                                        
TATTGGATTGTTGAAGGTGACTATTAAGAAGGGAACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAATCTAGGGAAGCAAgtaagtgatt--tgctttgcatctttttattagcttt------acttcttgttgatgctgtgaatcttgagtaaaattgtcttgtttattcag---------------------------------------