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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTGgtattacactaaaccacatgttgctagtactatttgtcaggatatcttaattgtgaaatttaatagtaatatttttcttggctcatattgtttaacatattactctgtccttttacag

Basic information

species Glycine max
transcript GLYMA08G12360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12360.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G080387_T01 (Zea mays), 5'ss of exon 5
ATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTGgtattacactaaaccacatgttgctagtactatttgtcaggatatcttaattgtgaaatttaatagtaatatttttcttg-gctcatattgtttaacatattactctgtccttttacag
 || |||||||||||||| ||||||||||| ||||| || |||||  ||||  | || || ||||| ||||  ||||||  |   |||   |    |||||  ||  |||  |||  | ||     ||||  | | | | | || ||| ||||||    |  |  |    |  |  | | |              
GTTCTTCAGCCCACTTGGGATGGTTCCAGTTATTGCATTGGTTGGGCTTGGCCTTTTCGAGAGAGGGTTCCCAGTGgtaaaagcttaattaatgatttgctgatatcatt-atcaata-atacggcttgt--actgtcagaata-tatgtttcttacattggtgcttcagagaagttcatt--------------

upper sequence: GLYMA08G12360.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 5
ATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTGgtattacactaaaccacatgttgctagtactatttgtcaggatatcttaattgtgaaatttaatagtaatatttttcttggctcatattgtttaacatattactctgtccttttacag---------
 ||||| || |||||||||||||| ||||| ||  | ||||| ||||||||  | ||||||||||||||||  |||||||   |  ||     |||    || |   |||  | |  || ||| |  |  ||||   ||      |||| || ||  |||  | || | | |||    ||  ||   |  | |          
GTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAGGCTTCCCAGTGgtatagtagaaattttgatgcctgtattttaattcttaa--atctctcatatcagaaaagaaaagtcggtattctttttccctctcactgat-accattcaccttggtttctccaaatatctatcag