1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTTCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcattaatggaaatcaatgttttgtgtcactctgttagctggacttgtccacaatgtaaattaaatacatgaaaacttttagggttaattacaaga...
species | Glycine max |
transcript | GLYMA08G12220.5 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCATEST: gi|208261342|gb|GE058250.1|GE058250
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTEST: gi|26268990|gb|CA820053.1|CA820053
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGT
EST: TGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCATEST: gi|21677259|gb|BQ629610.1|BQ629610
genomic: TGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCATEST: gi|193352292|gb|FK314266.1|FK314266
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTACCAGAGCTGCTGGAGGTGACAATGCATEST: gi|207782545|gb|GD754998.1|GD754998
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAAGGTGAACAATGCEST: gi|208138600|gb|GD940734.1|GD940734
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGA-GGTGA-CAATGC
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTEST: gi|163921292|gb|EH039740.1|EH039740
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATT
EST: TCTGGGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCATEST: gi|10237538|gb|BE806426.1|BE806426
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAACGTGGATTCTGCCAGACCTGCTGGAGGTGACAATGCAEST: gi|208046657|gb|GD849493.1|GD849493
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTAGGAAGGTGAACAAATEST: gi|193369370|gb|FK336632.1|FK336632
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCT-GGA-GGTGA-CAA-T
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAEST: gi|31305638|gb|CD390841.1|CD390841
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCATEST: gi|193487227|gb|FK451802.1|FK451802
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGAEST: gi|193514556|gb|FK467988.1|FK467988
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGEST: gi|208171604|gb|GD967143.1|GD967143
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAG
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAEST: gi|207797356|gb|GD769880.1|GD769880
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAEST: gi|193401174|gb|FK370145.1|FK370145
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAEST: gi|208281621|gb|GE073769.1|GE073769
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAG CTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcatta ... cttttaacagCTGAGGAACAAAAGGTGGATTCTGCCAGAGCTGCTGGAGGTGACAATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTTCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAAGGAGgtattcattaatggaaatcaatgttttgtgtcactctgttagctggacttgtccacaatgtaaattaaatacatgaaaacttttagggttaattacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG