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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctttatttgtcttgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag

Basic information

species Glycine max
transcript GLYMA08G11760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g68010.3 (Oryza sativa), 5'ss of exon 5
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgttt-ttcctttatttgtcttgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag
 || ||||||| || || ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||| ||| || ||    |||||||| || ||||||||    |||  ||| |      || | || ||| | | |   |   |  | |      || |||   | |   | ||  |||| |                     
TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAGgtgaactccactatct------aagtctaaacagagttctgctcagaaacct------gactga--tcataggtcatccttaccag--------------------

upper sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctttatttgtcttgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag
|| |||||  |  | || ||||| || || ||||| | ||| |||||||| |||||||||||||||||||| |||||   | ||||||||||||||||||||     ||  |||  ||  |  || |  |       | | | ||  | |     |      |   ||  ||   | ||  ||  | |      | || |  ||
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgtttt---gcatgtctag

upper sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcct-ttatttgt--cttgaaattt-atacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag
|| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| ||  | | || ||||||| | |||||||| | |  | ||| |||   | ||| | || ||||||||  ||    ||  |       || | || | |||  |||  | |                           
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatgagacttgatacaaacatca--cccatttgaccaaattaaatggatcctgtatt--tcag--------------------------

upper sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ15182 (Selaginella moellendorffii), 5'ss of exon 5
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcct-ttatttgtct-tgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag
|| || ||  |  | || || ||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||  | |    ||  |    || |||||||      || ||||||| || || ||     |      ||| ||||                                                          
GACACGGAACTTTTCGAGCAGATTGATCGTGATGTTAAGCGAACTCATCCTGATATGCAGTTTTTCTGTGGTGATAACGAGCGCGCGCACGAAAACCAGgtttgagtgattttttgtctgtggaagtttagtga----tgagtgcaagcag-------------------------------------------------------

upper sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ09811 (Selaginella moellendorffii), 5'ss of exon 5
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttt--tcctttatttgtcttgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag
|| || ||  |  | || || ||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||  | |    ||  |    || |||||||   |  ||| |||||||    |   |    |      ||| ||||                                                          
GACACGGAACTTTTCGAGCAGATTGATCGTGATGTTAAGCGAACTCATCCTGATATGCAGTTTTTCTGTGGTGATAACGAGCGCGCGCACGAAAACCAGgtttgagtgatttttttgtctgtgga---aggttagtgatgagtgcaagcag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328951|gb|FK019678.1|FK019678
EST:     CTGATACGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAG                         GAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCCGGGTGTA
genomic: CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctt ... ggattttcagGAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCCGGGTGTA
EST: gi|8286250|gb|BE023809.1|BE023809
EST:     CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAG                         GAGGCTTTGAAGAATA
genomic: CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctt ... ggattttcagGAGGCTTTGAAGAATA
EST: gi|207710952|gb|GD694016.1|GD694016
EST:     CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAG                         GAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCTGGGTGTA
genomic: CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctt ... ggattttcagGAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCCGGGTGTA