1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgactaacttgaatatagaaaaaaagagtatgcacttgtattgtatgattattaatgcttggttactttctttgcttacag
species | Glycine max |
transcript | GLYMA08G11590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|26058039|gb|CA800953.1|CA800953
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTANATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193645405|gb|FK590821.1|FK590821
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208209586|gb|GE001855.1|GE001855
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCATACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATNTAGCTGAGTATAGATTTGTTEST: gi|11687474|gb|BF595150.1|BF595150
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|151401990|gb|EV271803.1|EV271803
genomic: GGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|207830973|gb|GD805031.1|GD805031
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208089758|gb|GD889147.1|GD889147
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193315804|gb|FK281856.1|FK281856
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: TATCAGTAGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTCEST: gi|193402587|gb|FK368085.1|FK368085
genomic: TATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193623696|gb|FK578210.1|FK578210
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193358951|gb|FK325381.1|FK325381
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGEST: gi|207712083|gb|GD694219.1|GD694219
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATG
EST: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193311543|gb|FK275159.1|FK275159
genomic: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193609974|gb|FK563536.1|FK563536
genomic: GGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193425810|gb|FK387395.1|FK387395
genomic: GAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTAGTEST: gi|193520532|gb|FK475107.1|FK475107
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTT-GT
EST: TATCAGTGGAAAAAGTGGGAAGNGGAAAGTATTAAGCAAACTTGGCTTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTEST: gi|208164039|gb|GD965345.1|GD965345
genomic: TATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGC-TTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGT
EST: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|207831390|gb|GD801654.1|GD801654
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCCAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193396143|gb|FK361898.1|FK361898
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GGAAAAAGGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193670095|gb|FK608635.1|FK608635
genomic: GGAAAAA-GTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193709028|gb|FK648598.1|FK648598
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208173942|gb|GD966825.1|GD966825
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: TATCAGTAGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATEST: gi|193649087|gb|FK597526.1|FK597526
genomic: TATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAAEST: gi|208059897|gb|GD857409.1|GD857409
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAA
EST: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208160228|gb|GD953484.1|GD953484
genomic: GGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208096729|gb|GD892926.1|GD892926
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208330313|gb|GE132230.1|GE132230
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGGTTTGTTEST: gi|193430744|gb|FK396434.1|FK396434
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: TATCACGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193687372|gb|FK633945.1|FK633945
genomic: TATCA-GTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GTGG-AAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|193515776|gb|FK473352.1|FK473352
genomic: GTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: GGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208208439|gb|GE004328.1|GE004328
genomic: GGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAG-AG-AAAAGT-GGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTTEST: gi|208045636|gb|GD838938.1|GD838938
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTATAGATTTGTT
EST: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTG GAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgacta ... ttgcttacagGAGTGGTGGTTCTAAATGATATCAAAGAATATAGCTGAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGCTTGgtaatgactaacttgaatatagaaaaaaagagtatgcacttgtattgtatgattattaatgcttggttactttctttgcttacag
- - - - - AGTGGA
- - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - AAGCAA