Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGTCCTGTTCATTTTGATGCTTTCCATGCTGTCCTTGTTGAAACAAGCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggtttgtcagagttccagtttttgaagttcaaatatatgctctagttgcatcattactgttagaatatcatgaatatataacaagaatcagtt...

Basic information

species Glycine max
transcript GLYMA08G08190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g06690.1 (Oryza sativa), 5'ss of exon 5
ATATTGTCCTGTTCATTTTGATGCTTTCCATGCTGTCCTTGTTGAAACAAGCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggtttgtcagagttccagtttttgaagttcaaatata-tgctctagttgcatcattactgttagaatatcatgaatatataacaagaatcagtt---
||||| |||||| |||||||||||||||||  |||| ||||||||   ||  || || |||      ||||||||| ||     || |||    |||||||||  ||||||||| | | ||    |||   |   |   | | | |||  || | |   | ||||    | || | | ||  |     ||    ||   |    
ATATTTTCCTGTCCATTTTGATGCTTTCCACCCTGTGCTTGTTGATCTAACAATGCATATCGTGTACCTAAAAGCTGGTGTGACCAAATCGTCTCAGAAGgtacacaggtttgtgatactttagctttaatattcttttagacactgccatactggtgaccttac----aaaaaagcttgtctgagagactgagattgctagaa

upper sequence: GLYMA08G08190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 5
ATATTGTCCTGTTCATTTTGATGCTTTCCATGCTGTCCTTGTTGAAACAAGCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggtttgtcaga-gttccagtttttgaagt---------tcaaatatatgctctagttgcatca--ttactgttagaatatcatgaatatataacaagaatcagtt
            |||||||||| ||||||||||||| |||||||| | |||||| || |||| |||  | | |||| ||  |||  |  ||  |  ||||||| |||||||||| | |  ||||||||   || |          ||| |   |   ||| | |   |||  ||   |||   ||  |     ||| |  || | |   |  
------------TCATTTTGATTCTTTCCATGCTGTGCTTGTTGATATAAGCATACATATCACTCTGTTGAGAGCTGGTATTCATGCGCCTTCATCGAAGGTACCCAGGTTTgttacatattccagttcaagacggataatcttgtcacaatcacattcttgataagtcagcttttagttttgattgccaatctatcttgcatggacttgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722154|gb|BW651221.1|BW651221
EST:     GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAG                         T
genomic: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggt ... gattccagag-
EST: gi|209722154|gb|BW651221.1|BW651221
EST:     GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAG                         T
genomic: GCATTCACATCAGTCTACTAAAAGCTAGTTATCACACATCTCGACAGAAGgtatccaggt ... gattccagag-